Validating genomic predictions for economic traits in purebred US dairy heifers.

Autor: Toghiani S; USDA, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD 20705. Electronic address: sajjad.toghiani@usda.gov., VanRaden PM; USDA, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD 20705., Null DJ; USDA, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD 20705., Miles AM; USDA, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD 20705., Van Tassell CP; USDA, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD 20705.

Publikováno v: Journal of dairy science [J Dairy Sci] 2024 Dec; Vol. 107 (12), pp. 11117-11126. Date of Electronic Publication: 2024 Sep 27.

The Ruminant Telomere-to-Telomere (RT2T) Consortium.

Autor: Kalbfleisch TS; Department of Veterinary Science, University of Kentucky, Lexington, KY, USA., McKay SD; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Murdoch BM; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Adelson DL; School of Biological Sciences, the University of Adelaide, North Terrace, Adelaide, South Australia, Australia., Almansa-Villa D; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Becker G; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Beckett LM; Department of Animal Sciences, Purdue University, West Lafayette, IN, USA., Benítez-Galeano MJ; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Biase F; School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA., Casey T; Department of Animal Sciences, Purdue University, West Lafayette, IN, USA., Chuong E; BioFrontiers Institute, Department of Molecular Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA., Clark E; The Roslin Institute, University of Edinburgh, Edinburgh, UK., Clarke S; Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand., Cockett N; Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT, USA., Couldrey C; Livestock Improvement Corporation, Hamilton, New Zealand., Davis BW; Department of Veterinary Pathobiology, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA., Elsik CG; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Faraut T; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Gao Y; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Genet C; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Grady P; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Green J; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Green R; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Guan D; Department of Animal Science, University of California, Davis, Davis, CA, USA., Hagen D; Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK, USA., Hartley GA; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Heaton M; U.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA., Hoyt SJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Huang W; Department of Animal Science, Michigan State University, East Lansing, MI, USA., Jarvis E; Vertebrate Genome Laboratory, the Rockefeller University, New York, NY, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Kalleberg J; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Khatib H; Department of Animal and Dairy Sciences, the University of Wisconsin-Madison, Madison, WI, USA., Koepfi KP; Smithsonian-Mason School of Conservation, George Mason University, Front Royal, VA, USA.; Center for Species Survival, Smithsonian's National Zoo and Conservation Biology Institute, Front Royal, VA, USA., Koltes J; Department of Animal Science, Iowa State University, Ames, IA, USA., Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Kuehn C; Friedrich-Loeffler-Institute (German Federal Research Institute for Animal Health), Greifswald-Insel Riems, Germany., Leeb T; Institute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Leonard A; Animal Genomics, ETH Zürich, Zurich, Switzerland., Liu GE; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Low WY; The Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia., McConnell H; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., McRae K; Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand., Miga K; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.; Biomolecular Engineering Department, University of California, Santa Cruz, Santa Cruz, CA, USA., Mousel M; Animal Disease Research Unit, USDA ARS, Pullman, WA, USA.; School for Global Animal Health, Washington State University, Pullman, WA, USA., Neibergs H; Department of Animal Science, Washington State University, Pullman, WA, USA., Olagunju T; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Pennell M; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Petry B; Department of Animal Science, Iowa State University, Ames, IA, USA., Pewsner M; Institute of Fish and Wildlife Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pickett BD; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pineda P; The Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia., Potapova T; Stowers Institute for Medical Research, Kansas City, MO, USA., Rachagani S; Veterinary Medicine and Surgery, NextGen Precision Health Institute, University of Missouri, Columbia, MO, USA., Rhie A; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rijnkels M; Department of Veterinary Integrative Biosciences, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA., Robic A; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Rodriguez Osorio N; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Safonova Y; Computer Science and Engineering Department, Huck Institutes of the Life Sciences, Pennsylvania State University, State College, PA, USA., Schettini G; School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA., Schnabel RD; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Sirpu Natesh N; Department of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO, USA., Stegemiller M; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Storer J; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Stothard P; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada., Stull C; Division of Animal Sciences, University of Missouri, Columbia, MO, USA., Tosser-Klopp G; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Traglia GM; Genomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay., Tuggle CK; Department of Animal Science, Iowa State University, Ames, IA, USA., Van Tassell CP; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Watson C; Department of Biochemistry and Molecular Genetics, University of Louisville, Louisville, KY, USA., Weikard R; Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany., Wimmers K; Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany., Xie S; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA., Yang L; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA., Smith TPL; U.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA. tim.smith2@usda.gov., O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu., Rosen BD; Animal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA. ben.rosen@usda.gov.

Publikováno v: Nature genetics [Nat Genet] 2024 Aug; Vol. 56 (8), pp. 1566-1573. Date of Electronic Publication: 2024 Aug 05.

A Pilot Detection and Associate Study of Gene Presence-Absence Variation in Holstein Cattle.

Autor: Boschiero C; Animal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD 20705, USA.; Department of Veterinary Medicine, University of Maryland, College Park, MD 20742, USA., Neupane M; Animal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD 20705, USA., Yang L; Animal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD 20705, USA.; Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20742, USA., Schroeder SG; Animal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD 20705, USA., Tuo W; Animal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD 20705, USA., Ma L; Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20742, USA., Baldwin RL 6th; Animal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD 20705, USA., Van Tassell CP; Animal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD 20705, USA., Liu GE; Animal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD 20705, USA.

Publikováno v: Animals : an open access journal from MDPI [Animals (Basel)] 2024 Jun 28; Vol. 14 (13). Date of Electronic Publication: 2024 Jun 28.

Participatory investigation of goat farmers' breeding practices, trait preference, and selection criteria in Burkina Faso.

Autor: Badjibassa A; Unité de Formation et de Recherches Sciences et Technologie, Université Norbert ZONGO, BP 376, Koudougou, Burkina Faso., Ouédraogo D; Centre Universitaire de Ziniaré, Université Joseph KI-ZERBO, 03 BP 7021, Ouagadougou 03, Burkina Faso., Burger PA; Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, Savoyenstrasse 1, 1160, Vienna, Austria., Rosen BD; United States Department of Agriculture, Animal Genomics and Improvement Laboratory, 10300 Baltimore Ave, Beltsville, MD, 20705, USA., Van Tassell CP; United States Department of Agriculture, Animal Genomics and Improvement Laboratory, 10300 Baltimore Ave, Beltsville, MD, 20705, USA., Sölkner J; Division of Livestock Sciences, Department of Sustainable Agricultural Systems, University of Natural Resources and Life Sciences Vienna, Gregor-Mendel Strasse, 1180, Vienna, Austria., Soudré A; Unité de Formation et de Recherches Sciences et Technologie, Université Norbert ZONGO, BP 376, Koudougou, Burkina Faso. albert.soudre@unz.bf.

Publikováno v: Tropical animal health and production [Trop Anim Health Prod] 2024 Jan 08; Vol. 56 (1), pp. 35. Date of Electronic Publication: 2024 Jan 08.

Current challenges and future of agricultural genomes to phenomes in the USA.

Autor: Tuggle CK; Iowa State University, Ames, IA, USA. cktuggle@iastate.edu., Clarke JL; University of Nebraska-Lincoln, Lincoln, NE, USA., Murdoch BM; University of Idaho, Moscow, ID, USA., Lyons E; University of Arizona, Tucson, AZ, USA., Scott NM; Iowa State University, Ames, IA, USA., Beneš B; Purdue University, West Lafayette, IN, USA., Campbell JD; USDA ARS, Ames, IA, USA., Chung H; Iowa State University, Ames, IA, USA., Daigle CL; Texas A&M University, College Station, TX, USA., Das Choudhury S; University of Nebraska-Lincoln, Lincoln, NE, USA., Dekkers JCM; Iowa State University, Ames, IA, USA., Dórea JRR; University of Wisconsin-Madison, Madison, WI, USA., Ertl DS; Iowa Corn Growers Association, Johnston, USA., Feldman M; USDA ARS, Wapato, WA, USA., Fragomeni BO; University of Connecticut, Storrs, CT, USA., Fulton JE; Hy-Line International, Dallas Center, IA, USA., Guadagno CR; University of Wyoming, Laramie, WY, USA., Hagen DE; Oklahoma State University, Stillwater, OK, USA., Hess AS; University of Nevada-Reno, Reno, NV, USA., Kramer LM; Iowa State University, Ames, IA, USA., Lawrence-Dill CJ; Iowa State University, Ames, IA, USA., Lipka AE; University of Illinois Urbana-Champaign, Champaign, IL, USA., Lübberstedt T; Iowa State University, Ames, IA, USA., McCarthy FM; University of Arizona, Tucson, AZ, USA., McKay SD; University of Vermont, Burlington, VT, USA., Murray SC; Texas A&M University, College Station, TX, USA., Riggs PK; Texas A&M University, College Station, TX, USA., Rowan TN; University of Tennessee, Knoxville, TN, USA., Sheehan MJ; Cornell University, Ithaca, NY, USA., Steibel JP; Iowa State University, Ames, IA, USA., Thompson AM; Michigan State University, East Lansing, MI, USA., Thornton KJ; Utah State University, Logan, UT, USA., Van Tassell CP; USDA ARS, Beltsville, MD, USA., Schnable PS; Iowa State University, Ames, IA, USA. schnable@iastate.edu.

Publikováno v: Genome biology [Genome Biol] 2024 Jan 03; Vol. 25 (1), pp. 8. Date of Electronic Publication: 2024 Jan 03.