An acquisition account of genomic islands based on genome signature comparisons

Autor: Luyf ACM, Thygesen HH, Bart A, van Passel MWJ, van Kampen AHC, van der Ende A

Publikováno v: BMC Genomics, Vol 6, Iss 1, p 163 (2005)

Abstract Background Recent analyses of prokaryotic genome sequences have demonstrated the important force horizontal gene transfer constitutes in genome evolution. Horizontally acquired sequences are detectable by, among others, their dinucleotide co

Externí odkaz: https://doaj.org/article/9d0f3d6792a94d7c854202888da5aa0b

Sponge Microbiota Are a Reservoir of Functional Antibiotic Resistance Genes.

Autor: Versluis D; Laboratory of Microbiology, Wageningen University Wageningen, Netherlands., Rodriguez de Evgrafov M; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark Hørsholm, Denmark., Sommer MO; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark Hørsholm, Denmark., Sipkema D; Laboratory of Microbiology, Wageningen University Wageningen, Netherlands., Smidt H; Laboratory of Microbiology, Wageningen University Wageningen, Netherlands., van Passel MW; Laboratory of Microbiology, Wageningen UniversityWageningen, Netherlands; National Institute for Public Health and the EnvironmentBilthoven, Netherlands.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2016 Nov 17; Vol. 7, pp. 1848. Date of Electronic Publication: 2016 Nov 17 (Print Publication: 2016).

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions.

Autor: Versluis D; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands., D'Andrea MM; Department of Medical Biotechnologies, University of Siena, Italy., Ramiro Garcia J; 1] Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands [2] Top Institute Food and Nutrition, Wageningen, The Netherlands., Leimena MM; 1] Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands [2] Top Institute Food and Nutrition, Wageningen, The Netherlands., Hugenholtz F; 1] Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands [2] Top Institute Food and Nutrition, Wageningen, The Netherlands [3] Netherlands Consortium for Systems Biology, University of Amsterdam, The Netherlands., Zhang J; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands., Öztürk B; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands., Nylund L; 1] Functional Foods Forum, University of Turku, Turku, Finland [2] Department of Veterinary Biosciences, University of Helsinki, Finland., Sipkema D; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands., van Schaik W; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands., de Vos WM; 1] Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands [2] Department of Veterinary Biosciences, University of Helsinki, Finland [3] Department of Bacteriology and Immunology, Haartman Institute, University of Helsinki, Finland., Kleerebezem M; 1] Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands [2] Top Institute Food and Nutrition, Wageningen, The Netherlands [3] NIZO Food Research B.V., Ede, The Netherlands [4] Host-Microbe Interactomics Group, Wageningen University, Wageningen, The Netherlands., Smidt H; 1] Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands [2] Top Institute Food and Nutrition, Wageningen, The Netherlands., van Passel MW; 1] Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands [2] National Institute for Public Health and the Environment, Bilthoven, The Netherlands.

Publikováno v: Scientific reports [Sci Rep] 2015 Jul 08; Vol. 5, pp. 11981. Date of Electronic Publication: 2015 Jul 08.

Effects of selective digestive decontamination (SDD) on the gut resistome.

Autor: Buelow E; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands., Gonzalez TB; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands., Versluis D; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands., Oostdijk EA; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands., Ogilvie LA; Center for Biomedical and Health Science Research, School of Pharmacy and Biomolecular Sciences, University of Brighton, Brighton, UK Department of Vertebrate Genomics, Max Planck Institute for Infection Biology, Berlin, Germany., van Mourik MS; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands., Oosterink E; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands., van Passel MW; Laboratory of Systems and Synthetic Biology, Wageningen University, Wageningen, The Netherlands., Smidt H; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands., D'Andrea MM; Department of Medical Biotechnologies, University of Siena, Siena, Italy., de Been M; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands., Jones BV; Center for Biomedical and Health Science Research, School of Pharmacy and Biomolecular Sciences, University of Brighton, Brighton, UK Queen Victoria Hospital NHS Foundation Trust, East Grinstead, UK., Willems RJ; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands., Bonten MJ; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands., van Schaik W; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands w.vanschaik@umcutrecht.nl.

Publikováno v: The Journal of antimicrobial chemotherapy [J Antimicrob Chemother] 2014 Aug; Vol. 69 (8), pp. 2215-23. Date of Electronic Publication: 2014 Apr 07.

Design and analysis of a tunable synchronized oscillator.

Autor: Ryback BM; Systems and Synthetic Biology, Wageningen University, Wageningen, Netherlands., Odoni DI; Systems and Synthetic Biology, Wageningen University, Wageningen, Netherlands., van Heck RG; Systems and Synthetic Biology, Wageningen University, Wageningen, Netherlands., van Nuland Y; Systems and Synthetic Biology, Wageningen University, Wageningen, Netherlands., Hesselman MC; Systems and Synthetic Biology, Wageningen University, Wageningen, Netherlands., Martins Dos Santos VA; Systems and Synthetic Biology, Wageningen University, Wageningen, Netherlands., van Passel MW; Systems and Synthetic Biology, Wageningen University, Wageningen, Netherlands.; Centre for Zoonoses and Environmental Microbiology, Centre for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), Bilthoven, Netherlands., Hugenholtz F; Laboratory of Microbiology, Wageningen University, Wageningen, Netherlands.; Netherlands Consortium for Systems Biology, University of Amsterdam, Amsterdam, Netherlands.

Publikováno v: Journal of biological engineering [J Biol Eng] 2013 Nov 18; Vol. 7 (1), pp. 26. Date of Electronic Publication: 2013 Nov 18.