Comprehensive evaluation of primer pairs targeting the ammonia monooxygenase subunit A gene of complete ammonia-oxidizing Nitrospira .

Autor: Blom P; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands., Smith GJ; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands., van Kessel MAHJ; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands., Koch H; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands.; Bioresources Unit, Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Tulln an der Donau, Austria., Lücker S; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands.

Publikováno v: Microbiology spectrum [Microbiol Spectr] 2024 Oct 03; Vol. 12 (10), pp. e0051624. Date of Electronic Publication: 2024 Aug 21.

Activity-based labelling of ammonia- and alkane-oxidizing microorganisms including ammonia-oxidizing archaea.

Autor: Sakoula D; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Schatteman A; School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk, NR4 7TJ, United Kingdom., Blom P; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Jetten MSM; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., van Kessel MAHJ; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Lehtovirta-Morley L; School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk, NR4 7TJ, United Kingdom., Lücker S; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands.

Publikováno v: ISME communications [ISME Commun] 2024 Jul 11; Vol. 4 (1), pp. ycae092. Date of Electronic Publication: 2024 Jul 11 (Print Publication: 2024).

Feeding strategy and feed protein level affect the gut microbiota of common carp (Cyprinus carpio).

Autor: Mes W; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands.; Department of Plant and Animal Biology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands., Lücker S; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands., Jetten MSM; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands., Siepel H; Department of Plant and Animal Biology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands., Gorissen M; Department of Plant and Animal Biology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands., van Kessel MAHJ; Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands.

Publikováno v: Environmental microbiology reports [Environ Microbiol Rep] 2024 Jun; Vol. 16 (3), pp. e13262.

Influence of filter age on Fe, Mn and NH 4 ⁺ removal in dual media rapid sand filters used for drinking water production.

Autor: Haukelidsaeter S; Department of Earth Sciences, Faculty of Geosciences, Utrecht University, P.O Box 80021, Utrecht 3508 TA, the Netherlands. Electronic address: s.haukelidsaeter@uu.nl., Boersma AS; Department of Microbiology, Faculty of Science, Radboud Institute of Biological and Environmental Science, Radboud University, P.O. Box 9010, Nijmegen 6500 GL, the Netherlands., Kirwan L; Department of Earth Sciences, Faculty of Geosciences, Utrecht University, P.O Box 80021, Utrecht 3508 TA, the Netherlands., Corbetta A; Department of Earth Sciences, Faculty of Geosciences, Utrecht University, P.O Box 80021, Utrecht 3508 TA, the Netherlands., Gorres ID; Department of Microbiology, Faculty of Science, Radboud Institute of Biological and Environmental Science, Radboud University, P.O. Box 9010, Nijmegen 6500 GL, the Netherlands., Lenstra WK; Department of Earth Sciences, Faculty of Geosciences, Utrecht University, P.O Box 80021, Utrecht 3508 TA, the Netherlands., Schoonenberg FK; Vitens N.V., P.O. Box 1205, Zwolle 8001 BE, the Netherlands., Borger K; Vitens N.V., P.O. Box 1205, Zwolle 8001 BE, the Netherlands., Vos L; KWR Water Research Institute, P.O. Box 1072, Nieuwegein 3430 BB, the Netherlands., van der Wielen PWJJ; KWR Water Research Institute, P.O. Box 1072, Nieuwegein 3430 BB, the Netherlands; Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, Wageningen 6708 WE, the Netherlands., van Kessel MAHJ; Department of Microbiology, Faculty of Science, Radboud Institute of Biological and Environmental Science, Radboud University, P.O. Box 9010, Nijmegen 6500 GL, the Netherlands., Lücker S; Department of Microbiology, Faculty of Science, Radboud Institute of Biological and Environmental Science, Radboud University, P.O. Box 9010, Nijmegen 6500 GL, the Netherlands., Slomp CP; Department of Earth Sciences, Faculty of Geosciences, Utrecht University, P.O Box 80021, Utrecht 3508 TA, the Netherlands; Department of Microbiology, Faculty of Science, Radboud Institute of Biological and Environmental Science, Radboud University, P.O. Box 9010, Nijmegen 6500 GL, the Netherlands.

Publikováno v: Water research [Water Res] 2023 Aug 15; Vol. 242, pp. 120184. Date of Electronic Publication: 2023 Jun 10.

Universal activity-based labeling method for ammonia- and alkane-oxidizing bacteria.

Autor: Sakoula D; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands. dimitra.sakoula@univie.ac.at.; Division of Microbial Ecology, Center for Microbiology and Environmental Systems Science, University of Vienna, Althanstraße 14, 1090, Vienna, Austria. dimitra.sakoula@univie.ac.at., Smith GJ; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Frank J; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands.; Soehngen Institute of Anaerobic Microbiology, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Mesman RJ; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Kop LFM; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Blom P; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Jetten MSM; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands.; Soehngen Institute of Anaerobic Microbiology, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., van Kessel MAHJ; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands., Lücker S; Department of Microbiology, RIBES, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands. s.luecker@science.ru.nl.

Publikováno v: The ISME journal [ISME J] 2022 Apr; Vol. 16 (4), pp. 958-971. Date of Electronic Publication: 2021 Nov 06.