A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis

Autor: Gloerich Jolein, van Hijum Sacha AFT, Zhou Miaomiao, Medema Marnix H, Wessels Hans JCT, Siezen Roland J, Strous Marc

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 299 (2010)

Abstract Background Anaerobic ammonium-oxidizing (anammox) bacteria perform a key step in global nitrogen cycling. These bacteria make use of an organelle to oxidize ammonia anaerobically to nitrogen (N2) and so contribute ~50% of the nitrogen in the

Externí odkaz: https://doaj.org/article/6ea18879799c4f4d917c42165f95e504

Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources

Autor: van Hijum Sacha AFT, Roerdink Jos BTM, Hofstede Klaas, Breitling Rainer, Blom Evert, Kuipers Oscar P

Publikováno v: BMC Genomics, Vol 9, Iss 1, p 495 (2008)

Abstract Background Despite a plethora of functional genomic efforts, the function of many genes in sequenced genomes remains unknown. The increasing amount of microarray data for many species allows employing the guilt-by-association principle to pr

Externí odkaz: https://doaj.org/article/0eeaa1ca53184e26969c7b5f70004cf9

SIMAGE: simulation of DNA-microarray gene expression data

Autor: Kuipers Oscar P, Kok Jan, Jansen Ritsert C, Albers Casper J, van Hijum Sacha AFT

Publikováno v: BMC Bioinformatics, Vol 7, Iss 1, p 205 (2006)

Abstract Background Simulation of DNA-microarray data serves at least three purposes: (i) optimizing the design of an intended DNA microarray experiment, (ii) comparing existing pre-processing and processing methods for best analysis of a given DNA m

Externí odkaz: https://doaj.org/article/5379ede8153c4932a3a3bb649cec9d34

Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes

Autor: Nebenzahl-Guimaraes, Hanna, van Laarhoven, Arjan, Farhat, Maha R, Koeken, Valerie Acm, Mandemakers, Jornt, Zomer, Aldert, van Hijum, Sacha Aft, Netea, Mihai G, Murray, Megan, van Crevel, Reinout, van Soolingen, Dick, dI&I I&I-4, LS Klinisch Onderzoek Wagenaar, Social Networks, Solidarity and Inequality

Publikováno v: American Journal of Respiratory and Critical Care Medicine, 195(11), 1519. American Thoracic Society
American Journal of Respiratory and Critical Care Medicine, 195, 1519-1527
American Journal of Respiratory and Critical Care Medicine 195 (2017) 11
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
American Journal of Respiratory and Critical Care Medicine, 195(11), 1519-1527
American Journal of Respiratory and Critical Care Medicine, 195, 11, pp. 1519-1527

Successful transmission of tuberculosis depends on the interplay of human behavior, host immune responses, and Mycobacterium tuberculosis virulence factors. Previous studies have been focused on identifying host risk factors associated with increased

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8bdb97bc818a2f91600cded58c97a24f
https://doi.org/10.1164/rccm.201605-1042OC

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition

Autor: Cremers, Amelieke Jh, Zomer, Aldert L, Gritzfeld, Jenna F, Ferwerda, Gerben, van Hijum, Sacha Aft, Ferreira, Daniela M, Shak, Joshua R, Klugman, Keith P, Boekhorst, Jos, Timmerman, Harro M, de Jonge, Marien I, Gordon, Stephen B, Hermans, Peter Wm, Sub Bioinformatics, LS Klinisch Onderzoek Wagenaar

Publikováno v: Microbiome, 2. BioMed Central
Microbiome

Background Several cohort studies have indicated associations between S. pneumoniae and other microbes in the nasopharynx. To study causal relationships between the nasopharyngeal microbiome and pneumococcal carriage, we employed an experimental huma

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97f8f51c9e0cdc538ec0cc4c580d81d6
https://doi.org/10.1186/2049-2618-2-44