Automatic gene function prediction in the 2020’s

Autor: Makrodimitris, S., van Ham, R.C.H.J., Reinders, M.J.T.

Publikováno v: Genes, 11(11)

The current rate at which new DNA and protein sequences are being generated is too fast to experimentally discover the functions of those sequences, emphasizing the need for accurate Automatic Function Prediction (AFP) methods. AFP has been an active

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=narcis______::ddf9c9a915e9190835b471b5d136af37
http://resolver.tudelft.nl/uuid:60e2dfcb-83bd-4cf0-a8fa-96d37b1ae5c3

SLIDER: Mining correlated motifs in protein-protein interaction networks

Autor: Boyen, P., van Dijk, A.D.J., van Ham, R.C.H.J., Neven, F.

—Correlated motif mining (CMM) is the problem to find overrepresented pairs of patterns, called motif pairs, in interacting protein sequences. Algorithmic solutions for CMM thereby provide a computational method for predicting binding sites for pro

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::9b95ffa4e2fe849fa31a02bf2a886bda
https://research.wur.nl/en/publications/slider-mining-correlated-motifs-in-protein-protein-interaction-ne

The potential of plant genomics in breeding and development of sustainable production chains

Autor: Krens, F.A., van Ham, R.C.H.J., Gremmen, H.G.J.

Publikováno v: Inventions for a sustainable development of agriculture
Inventions for a sustainable development of agriculture. Zoetermeer: TransForum Agro&Groen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::114527c2540005d923c95b222f398466
https://research.wur.nl/en/publications/the-potential-of-plant-genomics-in-breeding-and-development-of-su

In silico prediction of potential allergenicity of proteins according to the FAO/WHO guidelines with the help of Allermatch

Autor: Fiers, M.W.E.J., Kleter, G.A., Peijnenburg, A.A.C.M., Nijland, H., Nap, J.P.H., van Ham, R.C.H.J.

Publikováno v: Allergy Matters: new approaches to allergy prevention and management
Allergy Matters: new approaches to allergy prevention and management. Dordrecht: Springer

Allermatch™ (http://allermatch.org) is a novel web tool for the efficient and standardized prediction of potential allergenicity of proteins according to the current recommendations of the FAO/WHO Expert Consultation, as outlined in the Codex alime

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::856754ac3aa3dcdbc98b483eaa230850
https://research.wur.nl/en/publications/in-silico-prediction-of-potential-allergenicity-of-proteins-accor

Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines

Autor: Fiers, M.W.E.J., Kleter, G.A., Nijland, H., Peijnenburg, A.A.C.M., Nap, J.P.H., van Ham, R.C.H.J.

Publikováno v: BMC Bioinformatics, 5
BMC Bioinformatics 5 (2004)

Background Novel proteins entering the food chain, for example by genetic modification of plants, have to be tested for allergenicity. Allermatch¿ http://allermatch.org is a webtool for the efficient and standardized prediction of potential allergen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::17336f3dfd0f5fe1e206ff5dbc6b0a41
https://research.wur.nl/en/publications/allermatch-a-webtool-for-the-prediction-of-potential-allergenicit