Zobrazeno 1 - 10
of 404
pro vyhledávání: '"synthetic long-read sequencing"'
Autor:
Silvia Liu, Indira Wu, Yan-Ping Yu, Michael Balamotis, Baoguo Ren, Tuval Ben Yehezkel, Jian-Hua Luo
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)
Silvia Liu et al. present LoopSeq, a synthetic long-read sequencing method that generates accurate long-read transcriptome data from short Illumina reads. As an example of possible applications, they use LoopSeq to investigate differential isoform ex
Externí odkaz:
https://doaj.org/article/e1cb04e6a8a1480383f9180ac1ea8876
Autor:
Liu, Silvia1,2,3, Wu, Indira4, Yu, Yan-Ping1,2,3, Balamotis, Michael4, Ren, Baoguo1,2, Ben Yehezkel, Tuval4 tuval@loopgenomics.com, Luo, Jian-Hua1,2,3 luoj@upmc.edu
Publikováno v:
Communications Biology. 4/27/2021, Vol. 4 Issue 1, p1-11. 11p.
Autor:
Michael A Balamotis, Silvia Liu, Baoguo Ren, Indira Wu, Jianhua Luo, Tuval Ben Yehezkel, Yanping Yu
Publikováno v:
Communications Biology
Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)
Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)
The characterization of human gene expression is limited by short read lengths, high error rates and large input requirements. Here, we used a synthetic long read (SLR) sequencing approach, LoopSeq, to generate accurate sequencing reads that span ful
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c48267db4588c389758bf760e36a0d69
http://europepmc.org/articles/PMC8079361
http://europepmc.org/articles/PMC8079361
Akademický článek
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Akademický článek
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Akademický článek
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Autor:
Ana Giraldo-Silva, Indira Wu, Ferran Garcia-Pichel, Michael A Balamotis, Nico Chung, Filip Lhota, Tuval Ben-Yehezkel, Marc W. Van Goethem, Melanie A. Preston, Leona Cerna, Evan Hurowitz, Hee Shin Kim, Vanessa Moreira Câmara Fernandes
The microbiome plays a central role in biochemical cycling and nutrient turnover of most ecosystems. Because it can comprise myriad microbial prokaryotes, eukaryotes and viruses, microbiome characterization requires high-throughput sequencing to atta
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c289bc13aa1d326ca7cdf6f8db902ea8
https://doi.org/10.1101/2020.10.02.324038
https://doi.org/10.1101/2020.10.02.324038
Autor:
Fereshteh Jahanbani, Wenyu Zhou, Volodymyr Kuleshov, Michael Snyder, Chao Jiang, Serafim Batzoglou
Publikováno v:
Nature Biotechnology. 34:64-69
Identifying bacterial strains in metagenome and microbiome samples using computational analyses of short-read sequences remains a difficult problem. Here, we present an analysis of a human gut microbiome using TruSeq synthetic long reads combined wit
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::edb463615671be67159806bfbf493c6b
https://doi.org/10.1038/nbt.3416
https://doi.org/10.1038/nbt.3416
Autor:
Kuleshov, Volodymyr, Jiang, Chao, Zhou, Wenyu, Jahanbani, Fereshteh, Batzoglou, Serafim, Snyder, Michael
Publikováno v:
Nature biotechnology
Identifying bacterial strains in metagenome and microbiome samples using computational analyses of short-read sequence remains a difficult problem. Here, we present an analysis of a human gut microbiome using on Tru-seq synthetic long reads combined
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::3bf83bf5cd81ad78b205d5cc8c97f6ea
http://europepmc.org/articles/PMC4884093
http://europepmc.org/articles/PMC4884093
Autor:
Silvia Liu, Yan-Ping Yu, Bao-Guo Ren, Tuval Ben-Yehezkel, Caroline Obert, Mat Smith, Wenjia Wang, Alina Ostrowska, Alejandro Soto-Gutierrez, Jian-Hua Luo
Publikováno v:
eLife, Vol 12 (2024)
The protein diversity of mammalian cells is determined by arrays of isoforms from genes. Genetic mutation is essential in species evolution and cancer development. Accurate long-read transcriptome sequencing at single-cell level is required to deciph
Externí odkaz:
https://doaj.org/article/23e99210857f4a04b3e00be99733567f