Zobrazeno 1 - 10
of 211
pro vyhledávání: '"sequencing error"'
Publikováno v:
Frontiers in Genetics, Vol 15 (2024)
IntroductionIn the realm of next-generation sequencing datasets, various characteristics can be extracted through k-mer based analysis. Among these characteristics, genome size (GS) is one that can be estimated with relative ease, yet achieving satis
Externí odkaz:
https://doaj.org/article/393389426bf3479586b1407f7b7d7f19
Autor:
Zoltán Rádai, Alex Váradi, Péter Takács, Nikoletta Andrea Nagy, Nicholas Schmitt, Eszter Prépost, Gábor Kardos, Levente Laczkó
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-19 (2024)
Abstract Background Parameters adversely affecting the contiguity and accuracy of the assemblies from Illumina next-generation sequencing (NGS) are well described. However, past studies generally focused on their additive effects, overlooking their p
Externí odkaz:
https://doaj.org/article/bba8552d4dfe4791aad683d967e7073a
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-17 (2021)
Abstract Background With the rapid development of long-read sequencing technologies, it is possible to reveal the full spectrum of genetic structural variation (SV). However, the expensive cost, finite read length and high sequencing error for long-r
Externí odkaz:
https://doaj.org/article/ed2f87bf0576446e8d9b3b0976ceda01
Akademický článek
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Publikováno v:
Biomolecules, Vol 13, Iss 6, p 934 (2023)
The emergence of third-generation single-molecule sequencing (TGS) technology has revolutionized the generation of long reads, which are essential for genome assembly and have been widely employed in sequencing the SARS-CoV-2 virus during the COVID-1
Externí odkaz:
https://doaj.org/article/7b29413c29bb4697a57fc154f70244d7
Autor:
Kelley Paskov, Jae-Yoon Jung, Brianna Chrisman, Nate T. Stockham, Peter Washington, Maya Varma, Min Woo Sun, Dennis P. Wall
Publikováno v:
BioData Mining, Vol 14, Iss 1, Pp 1-19 (2021)
Abstract Background As next-generation sequencing technologies make their way into the clinic, knowledge of their error rates is essential if they are to be used to guide patient care. However, sequencing platforms and variant-calling pipelines are c
Externí odkaz:
https://doaj.org/article/f3cff6906eb34a1ba9ef3f22a788f70a
Autor:
Jiaqi Liu, Jiayin Wang, Xiao Xiao, Xin Lai, Daocheng Dai, Xuanping Zhang, Xiaoyan Zhu, Zhongmeng Zhao, Juan Wang, Zhimin Li
Publikováno v:
BMC Genomics, Vol 21, Iss S10, Pp 1-12 (2020)
Abstract Background The emergence of the third generation sequencing technology, featuring longer read lengths, has demonstrated great advancement compared to the next generation sequencing technology and greatly promoted the biological research. How
Externí odkaz:
https://doaj.org/article/4baa912251fc45548bbe56ed7c36b6a4
Publikováno v:
mSystems, Vol 6, Iss 6 (2021)
ABSTRACT 16S rRNA gene sequencing is a common and cost-effective technique for characterization of microbial communities. Recent bioinformatics methods enable high-resolution detection of sequence variants of only one nucleotide difference. In this s
Externí odkaz:
https://doaj.org/article/c9dcfd366ae94a3d820ce6004dc39518
Autor:
Qilong Wang, Huikun Zeng, Yan Zhu, Minhui Wang, Yanfang Zhang, Xiujia Yang, Haipei Tang, Hongliang Li, Yuan Chen, Cuiyu Ma, Chunhong Lan, Bin Liu, Wei Yang, Xueqing Yu, Zhenhai Zhang
Publikováno v:
Frontiers in Immunology, Vol 12 (2021)
Antibody repertoire sequencing (Rep-seq) has been widely used to reveal repertoire dynamics and to interrogate antibodies of interest at single nucleotide-level resolution. However, polymerase chain reaction (PCR) amplification introduces extensive a
Externí odkaz:
https://doaj.org/article/e714c179e41249f9ac2871baef2ce53f
Akademický článek
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