Zobrazeno 1 - 10
of 98
pro vyhledávání: '"sequence-structure alignment"'
Publikováno v:
Molecules, Vol 27, Iss 12, p 3711 (2022)
Sequence–structure alignment for protein sequences is an important task for the template-based modeling of 3D structures of proteins. Building a reliable sequence–structure alignment is a challenging problem, especially for remote homologue targe
Externí odkaz:
https://doaj.org/article/d55eb8b492b8422da219a5cc902236b9
Akademický článek
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Autor:
Webb, Benjamin, Sali, Andrej
Genome sequencing projects have resulted in a rapid increase in the number of known protein sequences. In contrast, only about one-hundredth of these sequences have been characterized at atomic resolution using experimental structure determination me
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::f1cb5be6bc7ea62f1e5d46e9f6f8b996
https://escholarship.org/uc/item/2023k96v
https://escholarship.org/uc/item/2023k96v
Akademický článek
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Akademický článek
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Publikováno v:
Journal of Discrete Algorithms. 9(1):2-11
The complexity of pairwise RNA structure alignment depends on the structural restrictions assumed for both the input structures and the computed consensus structure. For arbitrarily crossing input and consensus structures, the problem is NP-hard. For
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::33f4dc1949e999ae8b66fd167d3ef728
Publikováno v:
Algorithmic Operations Research. 3(2):130-146
One of the main tasks in computational biology is the computation of alignments of genomic sequences to reveal their commonalities. In case of DNA or protein sequences, sequence information alone is usually sufficient to compute reliable alignments.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dris___00893::9b85151a6517cc1c587cfa6727375d72
https://ir.cwi.nl/pub/12702
https://ir.cwi.nl/pub/12702
Publikováno v:
Bioinformatics. 18(9):1250-1256
Motivation: Homology or comparative modeling is currently the most accurate method to predict the three dimensional structure of proteins. It generally consists in four steps: (1) databanks searching to identify the structural homolog, (2) target-tem
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dris___01166::922deee0959083179b6cd803c6cb752b
https://researchportal.unamur.be/en/publications/22b321de-1e9e-4dda-87a6-3806c79ece93
https://researchportal.unamur.be/en/publications/22b321de-1e9e-4dda-87a6-3806c79ece93
Publikováno v:
[Research Report] PI 1814, 2006, pp.18
[Research Report] RR-5973, INRIA. 2006
[Research Report] RR-5973, INRIA. 2006
Cet article propose des algorithmes efficaces pour déterminer l'alignement optimal entre une structure et une séquence protéique, problème connu sous le nom de protein threading. Nous posons ce problème comme un cas particulier d'appariement. No
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::83602154a4403882c442989273f29c9b
https://hal.inria.fr/inria-00091944
https://hal.inria.fr/inria-00091944
Publikováno v:
WABI-12th Workshop on Algorithms in Bioinformatics-2012
WABI-12th Workshop on Algorithms in Bioinformatics-2012, University of Ljubljana, Sep 2012, Ljubljana, Slovenia
WABI-12th Workshop on Algorithms in Bioinformatics-2012, University of Ljubljana, Sep 2012, Ljubljana, Slovenia
We present a general setting for structure-sequence comparison in a large class of RNA structures that unifies and generalizes a number of recent works on specific families on structures. Our approach is based on tree decomposition of structures and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::de712f8f08f014a7e15369d29832c8ee
https://hal.inria.fr/hal-00708580
https://hal.inria.fr/hal-00708580