Výsledky vyhledávání - "séquence du génome"

Genome Sequences of Three Nocardia cyriacigeorgica Strains and One Nocardia asteroides Strain

Autor: Emmanuelle Bergeron, Christophe Martin, Petar Pujic, Veronica Rodriguez-Nava, Thierry Winiarski, Florian Vautrin, Benoit Cournoyer, Vanessa Louzier, Danis Abrouk, Audrey Dubost

Publikováno v: Microbiology Resource Announcements
Microbiology Resource Announcements, American Society for Microbiology, 2019, 8 (33), pp.e00600-19. ⟨10.1128/MRA.00600-19⟩
Microbiology Resource Announcements, 2019, 8 (33), pp.e00600-19. ⟨10.1128/MRA.00600-19⟩
Microbiology Resource Announcements 33 (8), . (2019)

We report four draft genome sequences of Nocardia spp. The strains are the Nocardia cyriacigeorgica DSM 44484 pathogenic type strain; two environmental isolates, Nocardia cyriacigeorgica EML446 and EML1456; and the Nocardia asteroides ATCC 19247 nonp

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::36bb12d3b5f13a30c21c723e8439fa1c
https://doi.org/10.1128/mra.00600-19

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Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Autor: Shwetha C. Murali, Hsiao-ling Lu, Siegfried Roth, Huyen Dinh, Peter K. Dearden, Barbara M. I. Vreede, M. Emília Santos, Evgeny M. Zdobnov, Viera Kovacova, Christopher J. Holmes, Stefano Colella, Yuichiro Suzuki, Tamsin E. M. Jones, Chun-che Chang, Stefan Koelzer, Jeffery W. Jones, Essia Sghaier, Thorsten Horn, Richard A. Gibbs, Mackenzie Lovegrove, Panagiotis Ioannidis, Lucila Traverso, Subba Reddy Palli, Megan L. Porter, Olivia Tidswell, Peter Nagui Refki, Neta Ginzburg, Rolando Rivera-Pomar, Sandra L. Lee, Chris Jacobs, Cassandra G. Extavour, Jan Seibert, Amanda Dolan, David Armisén, Jayendra Nath Shukla, Kristen A. Panfilio, Christopher P. Childers, Matthew T. Weirauch, Daniel S.T. Hughes, Jiaxin Qu, Kim C. Worley, Hugh M. Robertson, Monica Munoz-Torres, Markus Friedrich, Emily C. Jennings, Elizabeth J. Duncan, Andrew G. Cridge, Hsu Chao, J. Spencer Johnston, Maurijn van der Zee, Mei-Ju May Chen, John H. Werren, Abderrahman Khila, Shannon Dugan, Stephen Richards, Lena Sachs, Joshua B. Benoit, Antonin J.J. Crumière, Nicolas Parisot, Megan Leask, Yen-Ta Chen, Harshavardhan Doddapaneni, Gérard Febvay, Donna M. Muzny, Ariel D. Chipman, Rose Richter, Robert M. Waterhouse, Leslie Pick, Monica F. Poelchau, Patricia J. Moore, Chloé Suzanne Berger, Richard J. Stancliffe, Yi Min Hsiao, Séverine Viala, Chien-Yueh Lee, Yi Han, Iris M. Vargas Jentzsch, Elise M. Didion, Deniz F. Erezyilmaz, Yong Lu, Andrew J. Rosendale, Peter Heger, Patrice Baa-Puyoulet

Publikováno v: CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Genome biology, vol. 20, no. 1, pp. 64
Genome biology, vol 20, iss 1
SEDICI (UNLP)
Universidad Nacional de La Plata
instacron:UNLP
Genome Biology
Genome Biology, BioMed Central, 2019, 20 (1), pp.64. ⟨10.1186/s13059-019-1660-0⟩
Genome Biology, Vol 20, Iss 1, Pp 1-26 (2019)
Genome Biology 1 (20), 26 p.. (2019)
Genome Biology, 2019, 20 (1), pp.64. ⟨10.1186/s13059-019-1660-0⟩
Genome Biology, Vol. 20, No 1 (2019) P. 64
Genome Biology, 20, 64. BMC

Background: The Hemiptera (aphids, cicadas, and true bugs) are a key insect order, with high diversity for feeding ecology and excellent experimental tractability for molecular genetics. Building upon recent sequencing of hemipteran pests such as phl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2d4b6dffa7d518988ee5b66386abf7d
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1660-0

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Genome sequence of pseudomonas sp. strain ST1, isolated fromo Olive (Olea europaea L.) knot galls in croatia

Autor: Philippe Normand, Petar Pujic, Katja Žanić, Slavko Perica, Pascale Fournier, Gabriela Vuletin Selak, Marina Raboteg, Audrey Dubost, Danis Abrouk

Publikováno v: Microbiology Resource Announcements 46 (8), . (2019)
Microbiology Resource Announcements
Microbiology Resource Announcements, American Society for Microbiology, 2019, 8 (46), ⟨10.1128/MRA.00986-19⟩

We report the genome sequence of a Pseudomonas sp. strain isolated from olive knot galls. The genome size is 6.101 Mbp with a G+C content of 58%. A total of 6,137 coding DNA sequences (CDS) were predicted, including 52 tRNA and 4 rRNA genes.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c596bdf6a5907822a1b110855941f637
http://prodinra.inra.fr/record/491658

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Prunus genetics and applications after de novo genome sequencing : achievements and prospects

Autor: Pere Arús, Iban Eduardo, Véronique Decroocq, Maria José Aranzana, Elisabeth Dirlewanger, Zhongshan Gao, Humberto Prieto, Cameron Peace, Ksenija Gasic, Sook Jung, Ignazio Verde, Albert G. Abbott, Ryutaro Tao, Amy Iezzoni

Publikováno v: Horticulture research
Horticulture research, Nature Publishing Group, 2019, 6, pp.58. ⟨10.1038/s41438-019-0140-8⟩
Horticulture Research (6), 58. (2019)
Horticulture Research, Vol 6, Iss 1, Pp 1-25 (2019)
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Digital.CSIC. Repositorio Institucional del CSIC
instname
Horticulture Research
IRTA Pubpro. Open Digital Archive
Institut de Recerca i Tecnologia Agroalimentàries (IRTA)

Prior to the availability of whole-genome sequences, our understanding of the structural and functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping of important traits and development of EST resources. With public r

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::19ebb8aec141e8724f5807464ccb496c
https://ddd.uab.cat/record/218114

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Improvement of genomic prediction by integrating additional single nucleotide polymorphisms selected from imputed whole genome sequencing data

Autor: Mogens Sandø Lund, Didier Boichard, Gert Pedersen Aamand, Guosheng Su, U. S. Nielsen, Aoxing Liu, Yachun Wang, Sébastien Fritz, Emre Karaman

Publikováno v: Liu, A, Lund, M S, Boichard, D A, Karaman, E, Fritz, S, Aamand, G P, Nielsen, U S, Wang, Y & Su, G 2019, ' Improvement of genomic prediction by integrating additional single nucleotide polymorphisms selected from imputed whole genome sequencing data ', Heredity . https://doi.org/10.1038/s41437-019-0246-7
Heredity
Heredity, Nature Publishing Group, 2020, 124 (1), pp.37-49. ⟨10.1038/s41437-019-0246-7⟩
Heredity 1 (124), 37-49. (2020)

International audience; The availability of whole genome sequencing (WGS) data enables the discovery of causative single nucleotide polymorphisms (SNPs) or SNPs in high linkage disequilibrium with causative SNPs. This study investigated effects of in

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1619c46b4bd93c7a4fd333599e5f218e
https://pure.au.dk/portal/da/publications/improvement-of-genomic-prediction-by-integrating-additional-single-nucleotide-polymorphisms-selected-from-imputed-whole-genome-sequencing-data(dc985d4f-a3a6-4bb5-9fa1-caf822c13b85).html

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Whole-Genome Sequence of a Pantoea sp. Strain Isolated from an Olive (Olea europaea L.) Knot

Autor: Marina Raboteg, Audrey Dubost, Gabriela Vuletin Selak, Philippe Normand, Petar Pujic, Danis Abrouk, Katja Žanić

Publikováno v: Microbiology Resource Announcements
Microbiology Resource Announcements, American Society for Microbiology, 2019, 8 (42), ⟨10.1128/MRA.00978-19⟩
Microbiology Resource Announcements 42 (8), . (2019)

Here, we present the total genome sequence of Pantoea sp. strain paga, a plant-associated bacterium isolated from knots present on olive trees grown on the Adriatic Coast. The genome size of Pantoea sp. paga is 5.08 Mb, with a G+C content of 54%. The

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7a81f5749fd1c5a77d81290249e12e23
https://hal-univ-lyon1.archives-ouvertes.fr/hal-02473982

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The global diversity of Haemonchus contortus is shaped by human intervention and climate

Autor: Doyle, Stephen R., Cortet, Jacques, Cabaret, Jacques, Berriman, Matthew, Holroyd, Nancy, Cotton, James A.

Publikováno v: Nature Communications (10), 14p. (2019)

Haemonchus contortus is a haematophagous parasitic nematode of veterinary interest. We have performed a survey of its genome-wide diversity using single-worm whole genome sequencing of 223 individuals sampled from 19 isolates spanning five continents

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1582::10e16de80a5c9167160f16f0d4c88117
http://prodinra.inra.fr/record/492835

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Using Sequence Variants in Linkage Disequilibrium with Causative Mutations to Improve Across-Breed Prediction in Dairy Cattle: A Simulation Study

Autor: van den Berg, Irene, Boichard, Didier, Guldbrandtsen, Bernt, Lund, Mogens S

Publikováno v: G3: Genes|Genomes|Genetics
G3: Genes, Genomes, Genetics, Vol 6, Iss 8, Pp 2553-2561 (2016)
van den Berg, I, Boichard, D, Guldbrandtsen, B & Lund, M S 2016, ' Using Sequence Variants in Linkage Disequilibrium with Causative Mutations to Improve Across-Breed Prediction in Dairy Cattle : A Simulation Study ', G3: Genes, Genomes, Genetics, vol. 6, no. 8, pp. 2553-2561 . https://doi.org/10.1534/g3.116.027730
G3
G3, Genetics Society of America, 2016, 6 (8), pp.2553-2561. ⟨10.1534/g3.116.027730⟩

Ajouter clé UT WOS; International audience; Sequence data is expected to increase the reliability of genomic prediction by containing causative mutations directly, especially in cases where low linkage disequilibrium between markers and causative mu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::e3c2927e62b20b5e36d282ca1909bf63
http://europepmc.org/articles/PMC4978908

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Forest tree genomics: 10 achievements from the past 10 years and future prospects

Publikováno v: Annals of Forest Science 1 (73), 77-103. (2016)
Annals of Forest Science
Annals of Forest Science, Springer Nature (since 2011)/EDP Science (until 2010), 2016, 73 (1), pp.77-103. ⟨10.1007/s13595-015-0488-3⟩
Annals of Forest Science, 2016, 73 (1), pp.77-103. ⟨10.1007/s13595-015-0488-3⟩

Key message This review highlights some of the discoveries and applications made possible by “omics” technologies over the last 10 years and provides perspectives for pioneering research to increase our understanding of tree biology. Context A de

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a6affb00452ecacbb68425838c0c22a2
https://doi.org/10.1007/s13595-015-0488-3

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Genome-wide study of structural variants in French dairy and beef breeds

Autor: Didier Boichard, mekki boussaha, Cécile Grohs, Rabia Letaief, Sebastien Fritz, Johanna Barbieri, Christophe Klopp, Romain Philippe, Dominique Rocha, Aurelien Capitan

Publikováno v: 69th Annual Meeting of the European Federation of Animal Science. 2018; 69. Annual Meeting of the European Federation of Animal Science (EAAP), Dubrovnik, HRV, 2018-08-27-2018-08-31, 352
HAL
Annual Meeting of the European Association for Animal Production
69. Annual Meeting of the European Federation of Animal Science (EAAP)
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia

International audience

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::4229c537954b247c12bec626ac255170
http://prodinra.inra.fr/record/447178

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