Structural insights into regulated intramembrane proteolysis by the positive alginate regulator MucP from Pseudomonas aeruginosa.

Autor: Lou X; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China., Li S; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China., Wang Y; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China., Wang R; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China., Li W; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China., Yan J; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China., Zhang Q; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China; Tianjin Key Laboratory of Protein Science, Nankai University, Tianjin 300071, China., Liu R; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China. Electronic address: yangyangliu@nankai.edu.cn., Bartlam M; College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China; Tianjin Key Laboratory of Protein Science, Nankai University, Tianjin 300071, China. Electronic address: bartlam@nankai.edu.cn.

Publikováno v: Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2024 Dec 25; Vol. 740, pp. 150999. Date of Electronic Publication: 2024 Nov 14.

Geometry Optimization Using the Frozen Domain and Partial Dimer Approaches in the Fragment Molecular Orbital Method: Implementation, Benchmark, and Applications to Protein Ligand-Binding Sites.

Autor: Okuwaki K; Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Osaka, Suita 565-0871, Japan.; School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Tokyo, Shinagawa-ku 142-8501, Japan.; RIKEN Center for Biosystems Dynamics Research, 1-72-22 Suehiro-cho, Yokohama, Tsurumi-ku 230-0045, Japan.; Department of Chemistry and Research Center for Smart Molecules, Faculty of Science, Rikkyo University, 3-34-1 Nishi-ikebukuro, Toshima-ku, Tokyo 171-8501, Japan.; Materials and Life Science Department, Engineering Technology Division, JSOL Corporation, KUDAN-KAIKAN TERRACE, Kudanminami, Chiyoda-ku, Tokyo 102-0074, Japan., Watanabe N; Mizuho Research & Technologies, Tokyo, 2-3 Kanda Nishiki-cho, Chiyoda-ku 101-8443, Japan., Kato K; Department of Applied Chemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Fukuoka, Noshi-ku 819-0395, Japan., Watanabe C; RIKEN Center for Biosystems Dynamics Research, 1-72-22 Suehiro-cho, Yokohama, Tsurumi-ku 230-0045, Japan., Nakayama N; CONFLEX Corporation, Shinagawa Center Building 6F, 3-23-17 Takanawa, Tokyo, Minato-ku 108-0074, Japan., Kato A; Scorpion Tech LLC, 471-5 Okada, Tateyama City 294-0024, Japan., Mochizuki Y; Department of Chemistry and Research Center for Smart Molecules, Faculty of Science, Rikkyo University, 3-34-1 Nishi-ikebukuro, Toshima-ku, Tokyo 171-8501, Japan.; Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Tokyo, Meguro-ku 153-8505, Japan., Nakano T; Division of Medicinal Safety Science, National Institute of Health Sciences, 3-25-26 Tonomachi, Kawasaki, Kawasaki-ku 210-9501, Japan., Honma T; RIKEN Center for Biosystems Dynamics Research, 1-72-22 Suehiro-cho, Yokohama, Tsurumi-ku 230-0045, Japan., Fukuzawa K; Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Osaka, Suita 565-0871, Japan.; School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Tokyo, Shinagawa-ku 142-8501, Japan.; Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, 6-6-11 Aoba, Aramaki, Sendai, Aoba-ku 980-8579, Japan.

Publikováno v: Journal of chemical information and modeling [J Chem Inf Model] 2024 Dec 23; Vol. 64 (24), pp. 9449-9458. Date of Electronic Publication: 2024 Dec 02.

Structural analysis of the siderophore-interacting protein from Vibrio anguillarum and its implications in classification of Vibrio homologs.

Autor: Liu C; CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China; Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, China., Han Y; CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China; Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, China; University of Chinese Academy of Sciences, Beijing, China., Ma Q; CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China; Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, China; University of Chinese Academy of Sciences, Beijing, China. Electronic address: qma@qdio.ac.cn.

Publikováno v: Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2024 Dec 20; Vol. 739, pp. 150979. Date of Electronic Publication: 2024 Nov 12.

Cryo-EM structure of the human glucose transporter GLUT7.

Autor: Lee SS; School of Life Sciences, GIST, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea., Kim S; School of Life Sciences, GIST, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea., Jin MS; School of Life Sciences, GIST, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea. Electronic address: misunjin@gist.ac.kr.

Publikováno v: Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2024 Dec 17; Vol. 738, pp. 150544. Date of Electronic Publication: 2024 Aug 13.

Structure-based molecular characterization of a putative aspartic proteinase from Bacteroides fragilis.

Autor: Oh H; Division of Biological Science and Technology, Yonsei University, Wonju, 26493, Republic of Korea., Kim J; Division of Biological Science and Technology, Yonsei University, Wonju, 26493, Republic of Korea., Park J; Division of Biological Science and Technology, Yonsei University, Wonju, 26493, Republic of Korea., Choi Z; Division of Biological Science and Technology, Yonsei University, Wonju, 26493, Republic of Korea., Hong J; Division of Biological Science and Technology, Yonsei University, Wonju, 26493, Republic of Korea., Jeon BY; Department of Biomedical Laboratory Science, Yonsei University, Wonju, 26493, Republic of Korea., Ka H; Division of Biological Science and Technology, Yonsei University, Wonju, 26493, Republic of Korea., Hong M; Division of Biological Science and Technology, Yonsei University, Wonju, 26493, Republic of Korea. Electronic address: minsunhong@yonsei.ac.kr.

Publikováno v: Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2024 Dec 17; Vol. 738, pp. 150547. Date of Electronic Publication: 2024 Aug 13.