Comparison of the targets obtained by a scoring matrix and by a regular expression. Application to the search for LXR binding sites

Autor: Antoine-Lorquin, Aymeric, Lagarrigue, Sandrine, Lecerf, Frédéric, Nicolas, Jacques, Belleannée, Catherine

Publikováno v: JOBIM 2015-16e Journées Ouvertes en Biologie, Informatique et Mathématiques
JOBIM 2015-16e Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France
Jobim 2015. 2015; 16. Journées Ouvertes en Biologie, Informatique et Mathématiques, Clermont-Ferrand, FRA, 2015-07-06-, 22

In bioinformatics, it is a common task to search for new instances of a pattern built from a set of reference sequences. For the simplest and most frequent cases, patterns are represented in two ways : regular expression or scoring matrix. In the fir

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::7d81a4b75217540f9108dcf0fc9b183c
https://inria.hal.science/hal-01197050/file/JOBIM2015_Rsat_LXRE_FINALE.pdf