SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

Autor: Manish Goel, Hequan Sun, Wen-Biao Jiao, Korbinian Schneeberger

Publikováno v: Genome Biology, Vol 20, Iss 1, Pp 1-13 (2019)

Abstract Genomic differences range from single nucleotide differences to complex structural variations. Current methods typically annotate sequence differences ranging from SNPs to large indels accurately but do not unravel the full complexity of str

Externí odkaz: https://doaj.org/article/fb882effbae74ff5ab665cf0a333b663

Karyotypic Evolution of Sauropsid Vertebrates Illuminated by Optical and Physical Mapping of the Painted Turtle and Slider Turtle Genomes

Autor: Thea B Gessler, Zhiqiang Wu, Eugenia E. Montiel, Nicole Valenzuela, Ling Sze Lee, Basanta Bista, Daleen Badenhorst, Beatriz Navarro-Domínguez

Publikováno v: Genes
Genes, Vol 11, Iss 928, p 928 (2020)
Volume 11
Issue 8

Recent sequencing and software enhancements have advanced our understanding of the evolution of genomic structure and function, especially addressing novel evolutionary biology questions. Yet fragmentary turtle genome assemblies remain a challenge to

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::994572b417617780e304df111e3f38fd
http://europepmc.org/articles/PMC7464131

SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

Autor: Wen-Biao Jiao, Korbinian Schneeberger, Han Sun, Manish Goel

Publikováno v: Genome Biology
Genome Biology, Vol 20, Iss 1, Pp 1-13 (2019)

Genomic differences range from single nucleotide differences to complex structural variations. Current methods typically annotate sequence differences ranging from SNPs to large indels accurately but do not unravel the full complexity of structural r

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e499080249c3c9bc300d7e1148ee0d03
https://doi.org/10.1186/s13059-019-1911-0

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Aligning the unalignable: bacteriophage whole genome alignments

Autor: Nicolas Pompidor, Anne Bergeron, Paul Guertin, Krister M. Swenson, Annie Chateau, Sèverine Bérard

Publikováno v: BMC Bioinformatics
BMC Bioinformatics, 2016, 17 (1), pp.30-43. ⟨10.1186/s12859-015-0869-5⟩
BMC Bioinformatics, BioMed Central, 2016, 17 (1), pp.30-43. ⟨10.1186/s12859-015-0869-5⟩

Background In recent years, many studies focused on the description and comparison of large sets of related bacteriophage genomes. Due to the peculiar mosaic structure of these genomes, few informative approaches for comparing whole genomes exist: do

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02acb308f57bee717c14963647b97694
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01275670