Zobrazeno 1 - 10
of 3 182
pro vyhledávání: '"de novo Assembly"'
Autor:
Keun Sik Baik, Sonny C. Ramos, Sang Hoon Na, Seon Ho Kim, A Rang Son, Michelle Miguel, Sang Suk Lee
Publikováno v:
Journal of Animal Science and Technology, Vol 66, Iss 6, Pp 1291-1295 (2024)
Corynebacterium sp. SCR221107 was isolated from the rumen fluid of healthy male Holstein dairy cows from a research farm at Suncheon, Jeollanam-do, Korea. Corynebacterium sp. SCR221107 is a functional probiotic candidate that produces vitamin B12. Al
Externí odkaz:
https://doaj.org/article/5f549b569ef84e8a995264a1ecdbbdc1
Autor:
David Dora, Peter Kiraly, Csenge Somodi, Balazs Ligeti, Edit Dulka, Gabriella Galffy, Zoltan Lohinai
Publikováno v:
Journal of Translational Medicine, Vol 22, Iss 1, Pp 1-22 (2024)
Abstract Background Advanced-stage non-small cell lung cancer (NSCLC) poses treatment challenges, with immune checkpoint inhibitors (ICIs) as the main therapy. Emerging evidence suggests the gut microbiome significantly influences ICI efficacy. This
Externí odkaz:
https://doaj.org/article/3f641779f0e74f468a91a1a5414bde6b
Autor:
Ikwhan Kim, Da-Ryung Jung, Ryeong-Hui Kim, Dokyung Lee, YeonGyun Jung, Ji Hoon Ha, Eun Kyung Lee, Jin Mo Kim, Jin Young Kim, Jun-Hwan Jang, Jun-Tae Bae, Yoon Soo Cho, Jae-Ho Shin
Publikováno v:
BMC Genomic Data, Vol 25, Iss 1, Pp 1-4 (2024)
Abstract Objectives Cutibacterium acnes is a Gram-positive bacterium commonly found on human skin, particularly in sebaceous areas. While it is typically considered a commensal, specific strain types based on single locus sequence typing (SLST) have
Externí odkaz:
https://doaj.org/article/c9cc1ac8c72943f89f6c076eca491301
Autor:
Grace Nabakooza, Darlene D. Wagner, Nehalraza Momin, Rachel L. Marine, William C. Weldon, M. Steven Oberste
Publikováno v:
BMC Research Notes, Vol 17, Iss 1, Pp 1-7 (2024)
Abstract Trimming adapters and low-quality bases from next-generation sequencing (NGS) data is crucial for optimal analysis. We evaluated six trimming programs, implementing five different algorithms, for their effectiveness in trimming adapters and
Externí odkaz:
https://doaj.org/article/490f0efb5ef649ff89982ef46b6767a3
Autor:
Kristen J. Wade, Rayo Suseno, Kerry Kizer, Jacqueline Williams, Juliano Boquett, Stacy Caillier, Nicholas R. Pollock, Adam Renschen, Adam Santaniello, Jorge R. Oksenberg, Paul J. Norman, Danillo G. Augusto, Jill A. Hollenbach
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-23 (2024)
Abstract The extremely high levels of genetic polymorphism within the human major histocompatibility complex (MHC) limit the usefulness of reference-based alignment methods for sequence assembly. We incorporate a short-read, de novo assembly algorith
Externí odkaz:
https://doaj.org/article/da420c82ac434ddc86e06bc9431d32c9
Autor:
Mir Henglin, Maryam Ghareghani, William T. Harvey, David Porubsky, Sergey Koren, Evan E. Eichler, Peter Ebert, Tobias Marschall
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-26 (2024)
Abstract Haplotype information is crucial for biomedical and population genetics research. However, current strategies to produce de novo haplotype-resolved assemblies often require either difficult-to-acquire parental data or an intermediate haploty
Externí odkaz:
https://doaj.org/article/3512fe7340b944e4bcccd787429f9cff
Autor:
Tolegen Assanbayev, Rakhmetolla Akilzhanov, Tlekbol Sharapatov, Rakhimbek Bektayev, Diana Samatkyzy, Daniyar Karabayev, Aidana Gabdulkayum, Asset Daniyarov, Saule Rakhimova, Ulan Kozhamkulov, Dos Sarbassov, Ainur Akilzhanova, Ulykbek Kairov
Publikováno v:
Frontiers in Genetics, Vol 15 (2024)
Externí odkaz:
https://doaj.org/article/5f94be083a9f460cb74663db18b2804e
Publikováno v:
Journal of Holistic Integrative Pharmacy, Vol 5, Iss 2, Pp 103-112 (2024)
Objective: There is a scarcity of transcriptome sequencing data available for the Leptopetalum biflorum, and numerous cyclotides remain undiscovered. It is urgent to establish a workflow based on de novo transcriptome assembly and make systematic pre
Externí odkaz:
https://doaj.org/article/e1b239fa29444d1887e15922d021197e
Autor:
Songtao Jiu, Muhammad Aamir Manzoor, Baozheng Chen, Yan Xu, Muhammad Abdullah, Xinyu Zhang, Zhengxin Lv, Jijun Zhu, Jun Cao, Xunju Liu, Jiyuan Wang, Ruie Liu, Shiping Wang, Yang Dong, Caixi Zhang
Publikováno v:
Molecular Horticulture, Vol 4, Iss 1, Pp 1-15 (2024)
Abstract Prunus conradinae, a valuable flowering cherry belonging to the Rosaceae family subgenus Cerasus and endemic to China, has high economic and ornamental value. However, a high-quality P. conradinae genome is unavailable, which hinders our und
Externí odkaz:
https://doaj.org/article/ef032e306be34b01ad5fa13c21fe7b43
Publikováno v:
Frontiers in Zoology, Vol 21, Iss 1, Pp 1-18 (2024)
Abstract Many questions in biology benefit greatly from the use of a variety of model systems. High-throughput sequencing methods have been a triumph in the democratization of diverse model systems. They allow for the economical sequencing of an enti
Externí odkaz:
https://doaj.org/article/6f7c66c1f1544864849c64ffb990ec76