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pro vyhledávání: '"d'hérouël, Aymeric Fouquier"'
Circular RNAs (circRNAs) are a class of RNA with an important role in micro RNA (miRNA) regulation recently discovered in Human and various other eukaryotes as well as in archaea. Here, we have analyzed RNA-seq data obtained from {\it Enterococcus fa
Externí odkaz:
http://arxiv.org/abs/1606.04576
Autor:
Innocenti, Nicolas, Golumbeanu, Monica, d'Hérouël, Aymeric Fouquier, Lacoux, Caroline, Bonnin, Rémy A., Kennedy, Sean P., Wessner, Françoise, Serror, Pascale, Bouloc, Philippe, Repoila, Francis, Aurell, Erik
Enterococcus faecalis is the third cause of nosocomial infections. To obtain the first comprehensive view of transcriptional organizations in this bacterium, we used a modified RNA-seq approach enabling to discriminate primary from processed 5'RNA en
Externí odkaz:
http://arxiv.org/abs/1410.1925
Publikováno v:
Biosystems 142-143:15-24 (2016)
Progress in cell type reprogramming has revived the interest in Waddington's concept of the epigenetic landscape. Recently researchers developed the quasi-potential theory to represent the Waddington's landscape. The Quasi-potential U(x), derived fro
Externí odkaz:
http://arxiv.org/abs/1407.6117
Autor:
d'Hérouël, Aymeric Fouquier
We present a Markov chain Monte Carlo algorithm for local alignments of nucleotide sequences aiming to infer putative transcription factor binding sites, referred to as the quadratic programming sampler. The new motif finder incorporates detailed bio
Externí odkaz:
http://arxiv.org/abs/0802.0258
Transcription regulation is largely governed by the profile and the dynamics of transcription factors' binding to DNA. Stochastic effects are intrinsic to this dynamics and the binding to functional sites must be controled with a certain specificity
Externí odkaz:
http://arxiv.org/abs/q-bio/0703063
Akademický článek
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Autor:
Nonnenmacher, Yannic, Palorini, Roberta, d'Herouël, Aymeric Fouquier, Krämer, Lisa, Neumann-Schaal, Meina, Chiaradonna, Ferdinando, Skupin, Alexander, Wegner, Andre, Hiller, Karsten
Publikováno v:
In Metabolic Engineering September 2017 43 Part B:147-155
Publikováno v:
In BioSystems April-May 2016 142-143:15-24
Autor:
Meiser, Johannes, Krämer, Lisa, Sapcariu, Sean C., Battello, Nadia, Ghelfi, Jenny, D'Herouel, Aymeric Fouquier, Skupin, Alexander, Hiller, Karsten
Publikováno v:
In Journal of Biological Chemistry 19 February 2016 291(8):3932-3946
Publikováno v:
In Virology 30 September 2010 405(2):524-529