Genome sequencing and metabolic network reconstruction of a novel sulfur-oxidizing bacterium Acidithiobacillus Ameehan

Autor: Peng Wu, Qianqian Yuan, Tingting Cheng, Yifan Han, Wei Zhao, Xiaoping Liao, Lu Wang, Jingyi Cai, Qianqian He, Ying Guo, Xiaoxia Zhang, Fuping Lu, Jingjing Wang, Hongwu Ma, Zhiyong Huang

Publikováno v: Frontiers in Microbiology, Vol 14 (2023)

Sulfur-oxidizing bacteria play a crucial role in various processes, including mine bioleaching, biodesulfurization, and treatment of sulfur-containing wastewater. Nevertheless, the pathway involved in sulfur oxidation is highly intricate, making it c

Externí odkaz: https://doaj.org/article/6573b9f5be6945b49dfa896ee5f70d72

Reconstruction of a Genome-Scale Metabolic Network for Shewanella oneidensis MR-1 and Analysis of its Metabolic Potential for Bioelectrochemical Systems

Autor: Jiahao Luo, Qianqian Yuan, Yufeng Mao, Fan Wei, Juntao Zhao, Wentong Yu, Shutian Kong, Yanmei Guo, Jingyi Cai, Xiaoping Liao, Zhiwen Wang, Hongwu Ma

Publikováno v: Frontiers in Bioengineering and Biotechnology, Vol 10 (2022)

Bioelectrochemical systems (BESs) based on Shewanella oneidensis MR-1 offer great promise for sustainable energy/chemical production, but the low rate of electron generation remains a crucial bottleneck preventing their industrial application. Here,

Externí odkaz: https://doaj.org/article/a91ef36478004aaba4441942fef6df3a

In silico model-guided identification of transcriptional regulator targets for efficient strain design

Autor: Lokanand Koduru, Meiyappan Lakshmanan, Dong-Yup Lee

Publikováno v: Microbial Cell Factories, Vol 17, Iss 1, Pp 1-12 (2018)

Abstract Background Cellular metabolism is tightly regulated by hard-wired multiple layers of biological processes to achieve robust and homeostatic states given the limited resources. As a result, even the most intuitive enzyme-centric metabolic eng

Externí odkaz: https://doaj.org/article/238318946ea24da7bd64cb630c054822

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Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

Autor: Boyang Ji, Simonas Marcišauskas, Jens Nielsen

Publikováno v: BMC Bioinformatics
Marcišauskas, S, Ji, B & Nielsen, J 2019, ' Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model ', BMC Bioinformatics, vol. 20, 551 . https://doi.org/10.1186/s12859-019-3134-5
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-9 (2019)

Background Kluyveromyces marxianus is a thermotolerant yeast with multiple biotechnological potentials for industrial applications, which can metabolize a broad range of carbon sources, including less conventional sugars like lactose, xylose, arabino

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c41aaa068b30924e34e3bd7ab0ac8541
http://europepmc.org/articles/PMC6833147