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Direct detection of OXA-48-like carbapenemase variants with and without co-expression of an extended-spectrum β-lactamase from bacterial cell lysates using mass spectrometry

Autor: Scott R. Kronewitter, James L. Stephenson, Arvind Verma, William M. McGee, Jason R. Neil, Marjaana Viirtola

Publikováno v: Journal of Mass Spectrometry and Advances in the Clinical Lab, Vol 20, Iss, Pp 25-34 (2021)
Journal of Mass Spectrometry and Advances in the Clinical Lab

Highlights • LC-MS methods are used to identify intact OXA-48 like enzymes from bacterial lysates. • Individual protein variants of the OXA-48 like carbapenemases can be detected with tandem mass spectrometry. • OXA-48 like carbapenemases can b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7805096e04f78395d3d7e73173308107
http://www.sciencedirect.com/science/article/pii/S2667145X21000080

Extended disorder at the cell surface: The conformational landscape of the ectodomains of syndecans

Autor: Frank Gondelaud, Fabien Chirot, Adam Liwo, Sylvie Ricard-Blum, Aurélien Le Fèvre, Bertrand Duclos, Adriana E. Miele, Mathilde Bouakil

Publikováno v: Matrix Biology Plus
Matrix Biology Plus, 2021, 12 (3-4), pp.100081. ⟨10.1016/j.mbplus.2021.100081⟩
'Matrix Biology Plus ', vol: 12, pages: 100081-1-100081-19 (2021)
Matrix Biology Plus, Vol 12, Iss, Pp 100081-(2021)

Highlights • The syndecan ectodomains are flexible random-coil intrinsically disordered proteins. • Their extended conformations have the same size as their cell surface partners. • Their binding-motifs to cells and receptors are not accessible

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ffdf479eba653d09f2444a8e356f8047
https://doi.org/10.1016/j.mbplus.2021.100081

Prediction of LC-MS/MS Properties of Peptides from Sequence by Deep Learning*

Autor: Michael F. Moran, Shenheng Guan, Bin Ma

Publikováno v: Molecular & Cellular Proteomics : MCP

Indexed retention times (iRT), MS1 (the first level of mass analysis) or survey scan charge state distributions, and sequence ion intensities of MSMS (tandom mass spectrometry) spectra were predicted from peptide sequence by use of long-short term me

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae33027c872ebdecea74b6b397d564a9
http://europepmc.org/articles/PMC6773555