BioHackEU22 Project 22: Plant data exchange and standard interoperability

Autor: Arend, Daniel, Beier, Sebastian, bouri, laurent, Brandizi, Marco, Hobern, Donald, Floch, Erwan Le, Mühlhaus, Timo, Pommier, Cyril, Owen, Stuart, Rocca-Serra, Philippe, Rosnet, Thomas, Soiland-Reyes, Stian

Publikováno v: Arend, D, Beier, S, bouri, L, Brandizi, M, Hobern, D, Floch, E L, Mühlhaus, T, Pommier, C, Owen, S, Rocca-Serra, P, Rosnet, T & Soiland-Reyes, S 2022 ' BioHackEU22 Project 22: Plant data exchange and standard interoperability ' . https://doi.org/10.37044/osf.io/c724r

Status of discussions around the topic of data standard formats for plant sciences and their interoperability at the BioHackathon Europe 2022 in Paris.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3818::b3659840216348bc0540e0143a1a6e57
https://doi.org/10.37044/osf.io/c724r

The IFB Catalogue

Autor: Brancotte, Bryan, Kengni, Hippolyte, Rosnet, Thomas, Bouri, Laurent, Ison, Jon, Sand, Olivier, Chiapello, Hélène, Gaignard, Alban, Milanesi, Sylvain, van Helden, Jacques, Ménager, Hervé

The IFB Catalogue is a centralized database developed as part of the IFB Distributed national environment of services in Bioinformatics. Its aim is to ensure the visibility and accessibility of the Bioinformatics resources provided and maintained by

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2918b07a0c783a334e2220ef6c5544d9

Evaluation of genome assembly software based on long reads

Autor: Bouri, Laurent, Lavenier, Dominique, Gibrat, Jean-Francois, Dominguez del Angel, Victoria Fabia

Publikováno v: [Research Report] France Genomique. 2017

During the last 30 years, Genomics has been revolutionized by the development of first- and second-generation sequencing (SGS) technologies, enabling the completion of many remarkable projects as the Human Genome Project, the 1000 Genomes Project and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7dbef4cd82d8fea0806fac9a9b776e6c
https://hal.inria.fr/hal-01481801

Evaluation des logiciels d'assemblage utilisant des lectures longues

Autor: Bouri, Laurent, Lavenier, Dominique

Publikováno v: [Rapport de recherche] RT-0475, INRIA Rennes-Bretagne Atlantique. 2016

Ce rapport compare plusieurs programmes d'assemblage de génomes qui utilisent les technologies de séquençage de 3ème génération (longues lectures). Les expérimentations ont été faites sur 4 génomes de référence et les résultats évalués

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::b2e110b00238b26a1480dadaf7b29829
https://inria.hal.science/hal-01282892

Additional file 6: Figure S5. of Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications

Autor: Sapriel, Guillaume, Konjek, Julie, Orgeur, Mickael, Bouri, Laurent, FrĂŠzal, Lise, Anne-Laure Roux, Dumas, Emilie, Brosch, Roland, Bouchier, Christiane, Brisse, Sylvain, Vandenbogaert, Mathias, Jean-Michel Thiberge, ValĂŠrie Caro, Ngeow, Yun, Tan, Joon, Jean-Louis Herrmann, Jean-Louis Gaillard, Heym, Beate, Wirth, Thierry

Comparison among three M. abscessus sub-species. The Venn diagram shows the number of genes in each MAB sub-species type strain. Number of homologous genes (more than 50Â % protein sequence identity using BBH method) are indicated at the intersectio

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::788ff29e9ddd7d25d77db2705bb52ecd