Zobrazeno 1 - 10
of 93
pro vyhledávání: '"bioinformatic tool"'
Autor:
C. Parrillo, F. Persiani, G. Mantini, B. Cellini, A. D’Amati, D. Lucchetti, G. Scambia, A. Sgambato, L. Giacò
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 23, Iss , Pp 4143-4147 (2024)
In the last decade, it has been recognized that tumors do not exist in isolation but interact with surrounding cells, blood vessels, immune cells, and extracellular matrix components. This understanding has shifted the focus from tumor cells alone to
Externí odkaz:
https://doaj.org/article/c7666e1f1fa7489fb1a0d00bd9f4ea0c
Autor:
Doan Hoang Phu, Tuempong Wongtawan, Phitchayapak Wintachai, Nguyen Thi Nhung, Nguyen Thi Phuong Yen, Juan Carrique-Mas, Conny Turni, Lida Omaleki, Patrick J. Blackall, Thotsapol Thomrongsuwannakij
Publikováno v:
Poultry Science, Vol 103, Iss 4, Pp 103485- (2024)
ABSTRACT: Chickens are the primary reservoirs of Campylobacter spp., mainly C. jejuni and C. coli, that cause human bacterial gastrointestinal infections. However, genomic characteristics and antimicrobial resistance of Campylobacter spp. in low- to
Externí odkaz:
https://doaj.org/article/34ed2dfa20cd476c99c2beed5e2ca2ee
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-21 (2021)
Abstract Most eukaryotic genes express alternative polyadenylation (APA) isoforms. A growing number of RNA sequencing methods, especially those used for single-cell transcriptome analysis, generate reads close to the polyadenylation site (PAS), terme
Externí odkaz:
https://doaj.org/article/c936850cff8d4b479959056b2950b07e
Publikováno v:
Plant Methods, Vol 17, Iss 1, Pp 1-11 (2021)
Abstract Background Dispensability of genes in a phylogenetic lineage, e.g. a species, genus, or higher-level clade, is gaining relevance as most genome sequencing projects move to a pangenome level. Most analyses classify genes as core genes, which
Externí odkaz:
https://doaj.org/article/3ff4182385da4ae89662c5a57556c0fe
Autor:
August Yue Huang, Eunjung Alice Lee
Publikováno v:
Frontiers in Aging, Vol 2 (2022)
Somatic mutations are DNA variants that occur after the fertilization of zygotes and accumulate during the developmental and aging processes in the human lifespan. Somatic mutations have long been known to cause cancer, and more recently have been im
Externí odkaz:
https://doaj.org/article/feabcc27055a4b5fa7211e0a251b7dd7
Akademický článek
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Autor:
Dariusz Kaczmarczyk, Jacek Wolnicki
Publikováno v:
Animals, Vol 12, Iss 23, p 3329 (2022)
The management of genetic resources deposited in gene banks requires knowledge of the genetic profiles of the gamete donors and bioinformatics tools to process this information. In this work, we show how to use Genassemblage 2.2 software in managing
Externí odkaz:
https://doaj.org/article/8e9db076cf8347e486e2478f52d214d6
Publikováno v:
Biology, Vol 11, Iss 10, p 1422 (2022)
In this paper, we describe a method for the study of colocalization effects between stretch–stretch and stretch–point genome tracks based on a set of indices varying within the (–1, +1) interval. The indices combine the distances between the ce
Externí odkaz:
https://doaj.org/article/82a3450b6033463389f2d6ca11f1249c
Publikováno v:
Biology, Vol 10, Iss 10, p 1026 (2021)
Conduct a reanalysis of transcriptome data for studying intracellular signaling or solving other experimental problems is becoming increasingly popular. Gene expression data are archived as microarray or RNA-seq datasets mainly in two public database
Externí odkaz:
https://doaj.org/article/d0190444de534c82be69e4c9c9bd2d4a
Autor:
Mayur Divate, Edwin Cheung
Publikováno v:
Frontiers in Genetics, Vol 9 (2018)
Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-seq) is a powerful genomic technology that is used for the global mapping and analysis of open chromatin regions. However, for users to process and analyze such data the
Externí odkaz:
https://doaj.org/article/d672849cddc8423e85b186a09fc6559a