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FiCoS: a fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks

Autor: Simone Spolaor, Paolo Cazzaniga, Leonardo Rundo, Giulia Capitoli, Marco S. Nobile, Giancarlo Mauri, Andrea Tangherloni, Daniela Besozzi

Publikováno v: PLoS Computational Biology, Vol 17, Iss 9, p e1009410 (2021)
PLoS Computational Biology
PLoS Computational Biology, 17(9):e1009410. Public Library of Science

Mathematical models of biochemical networks can largely facilitate the comprehension of the mechanisms at the basis of cellular processes, as well as the formulation of hypotheses that can be tested by means of targeted laboratory experiments. Howeve

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5c5ef324e5a7e0eb7e262c45afb48304
https://doi.org/10.1101/2021.01.15.426855

Parity-Check Coding Based on Genetic Circuits for Engineered Molecular Communication Between Biological Cells

Autor: Alessio Marcone, Massimiliano Pierobon, Maurizio Magarini

Publikováno v: IEEE Transactions on Communications. 66:6221-6236

Synthetic biology, through genetic circuit engineering in biological cells, is paving the way toward the realization of programmable man-made living devices, able to naturally operate within normally less accessible domains, i.e. , the biological and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4243c9a735c27310b287567e5e737f1b
https://doi.org/10.1109/tcomm.2018.2859308

Towards human cell simulation

Autor: Roman Senkerik, Marco S. Nobile, Salvatore Vitabile, Esko Turunen, Giancarlo Mauri, Marco Gribaudo, Adam Viktorin, Tomas Kadavy, Sabri Pllana, Simone Spolaor, Natalija Stojanovic, Mauro Iacono, Aleš Zamuda, Zuzana Kominkova Oplatkova

Publikováno v: Lecture Notes in Computer Science ISBN: 9783030162719
High-Performance Modelling and Simulation for Big Data Applications

The faithful reproduction and accurate prediction of the phe-notypes and emergent behaviors of complex cellular systems are among the most challenging goals in Systems Biology. Although mathematical models that describe the interactions among all bio

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee8f952d19bf09ad6173b1ee2484c2c6
http://hdl.handle.net/11591/410134

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