Localization and discrimination of GG mismatch in duplex DNA by synthetic ligand-enhanced protein nanopore analysis.

Autor: Lyu W; Department of Chemistry and Chemical Engineering, Guangzhou Key Laboratory for Environmentally Functional Materials and Technology, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou Higher Education Mega Center, Guangzhou 510006, P.R. China.; Department of Physics, RWTH Aachen University, Templergraben 55, 52062 Aachen, Germany., Zhu J; Department of Chemistry and Chemical Engineering, Guangzhou Key Laboratory for Environmentally Functional Materials and Technology, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou Higher Education Mega Center, Guangzhou 510006, P.R. China., Huang X; Department of Chemistry and Chemical Engineering, Guangzhou Key Laboratory for Environmentally Functional Materials and Technology, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou Higher Education Mega Center, Guangzhou 510006, P.R. China., Chinappi M; Univ Roma Tor Vergata, Dept Ind Engn, Via Politecn 1, I-00133 Rome, Italy., Garoli D; Istituto Italiano di Tecnologia, Via Morego 30, 16136 Genova, Italy.; Dipartimento di Scienze e Metodi dell'Ingegneria, Università di Modena e Reggio Emilia, via Amendola 2, 42122 Reggio Emilia, Italy., Gui C; Department of Chemistry and Chemical Engineering, Guangzhou Key Laboratory for Environmentally Functional Materials and Technology, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou Higher Education Mega Center, Guangzhou 510006, P.R. China., Yang T; Department of Chemistry and Chemical Engineering, Guangzhou Key Laboratory for Environmentally Functional Materials and Technology, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou Higher Education Mega Center, Guangzhou 510006, P.R. China., Wang J; Department of Chemistry and Chemical Engineering, Guangzhou Key Laboratory for Environmentally Functional Materials and Technology, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou Higher Education Mega Center, Guangzhou 510006, P.R. China.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2024 Nov 11; Vol. 52 (20), pp. 12191-12200.

Cleavage of DNA Substrate Containing Nucleotide Mismatch in the Complementary Region to sgRNA by Cas9 Endonuclease: Thermodynamic and Structural Features.

Autor: Baranova SV; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia., Zhdanova PV; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia., Koveshnikova AD; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.; Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia., Pestryakov PE; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.; Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia., Vokhtantsev IP; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia., Chernonosov AA; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia., Koval VV; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.; Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia.

Publikováno v: International journal of molecular sciences [Int J Mol Sci] 2024 Oct 09; Vol. 25 (19). Date of Electronic Publication: 2024 Oct 09.

Ultra-sensitive DNA detection with single-base mismatch resolution using a tapered thin-diameter photonic crystal fiber interferometer.

Autor: Wan H, Chen X, Zhang S, Xiong J, Jiang W, Liu H, Wan C, Wang J, Xiao Y, Wu Z, Chao J

Publikováno v: Optics express [Opt Express] 2024 Aug 26; Vol. 32 (18), pp. 31514-31524.

A mechanistic study on the tolerance of PAM distal end mismatch by SpCas9.

Autor: Dey D; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India., Chakravarti R; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India., Bhattacharjee O; Plant-Microbe Interaction Division, National Institute of Plant Genome Research, Delhi, India., Majumder S; Department of Life Sciences, Presidency University, Kolkata, India., Chaudhuri D; Department of Life Sciences, Presidency University, Kolkata, India., Ahmed KT; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India., Roy D; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India., Bhattacharya B; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India., Arya M; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India., Gautam A; Algorithms in Bioinformatics, Institute for Bioinformatics and Medical Informatics, University of Tübingen, Tübingen, Baden-Württemberg, Germany; International Max Planck Research School 'From Molecules to Organisms', Max Planck Institute for Biology, Tübingen, Baden-Württemberg, Germany., Singh R; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India., Gupta R; Infectious Diseases and Immunology Division, Indian Institute of Chemical Biology, Kolkata, West Bengal, India., Ravichandiran V; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India., Chattopadhyay D; Sister Nivedita University, Kolkata, West Bengal, India., Ghosh A; Department of Biochemistry, Bose Institute, Kolkata, West Bengal, India., Giri K; Department of Life Sciences, Presidency University, Kolkata, India., Roy S; Infectious Diseases and Immunology Division, Indian Institute of Chemical Biology, Kolkata, West Bengal, India., Ghosh D; Department of Natural Products, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India. Electronic address: dipanjan4u@gmail.com.

Publikováno v: The Journal of biological chemistry [J Biol Chem] 2024 Jul; Vol. 300 (7), pp. 107439. Date of Electronic Publication: 2024 Jun 03.

Isomerization Pathways of a Mismatched Base Pair of A:8OG in Free Duplex DNA.

Autor: Kim H; Department of Chemistry and Institute of Functional Materials, Pusan National University, Busan 46241, South Korea., Pak Y; Department of Chemistry and Institute of Functional Materials, Pusan National University, Busan 46241, South Korea.

Publikováno v: Journal of chemical information and modeling [J Chem Inf Model] 2024 Jun 10; Vol. 64 (11), pp. 4511-4517. Date of Electronic Publication: 2024 May 20.