Zobrazeno 1 - 10
of 122
pro vyhledávání: '"alignment-free methods"'
Autor:
Hongyu Yu, Stephen S.-T. Yau
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 23, Iss , Pp 2083-2096 (2024)
Understanding the structural similarity between genomes is pivotal in classification and phylogenetic analysis. As the number of known genomes rockets, alignment-free methods have gained considerable attention. Among these methods, the natural vector
Externí odkaz:
https://doaj.org/article/07cdc645e42749c680175460cf766e69
Publikováno v:
Frontiers in Bioinformatics, Vol 4 (2024)
Transcription factors are essential DNA-binding proteins that regulate the transcription rate of several genes and control the expression of genes inside a cell. The prediction of transcription factors with high precision is important for understandi
Externí odkaz:
https://doaj.org/article/4e4e9a81dfd8440fab778ee4a259290f
Autor:
Dorota Bielińska-Wąż, Piotr Wąż, Agata Błaczkowska, Jan Mandrysz, Anna Lass, Paweł Gładysz, Jacek Karamon
Publikováno v:
Symmetry, Vol 16, Iss 8, p 967 (2024)
In this paper, an alignment-free bioinformatics technique, termed the 20D-Dynamic Representation of Protein Sequences, is utilized to investigate the similarity/dissimilarity between Baculovirus and Echinococcus multilocularis genome sequences. In th
Externí odkaz:
https://doaj.org/article/63ddf88201a5473a9ee262f7cce5a770
Akademický článek
Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.
K zobrazení výsledku je třeba se přihlásit.
Akademický článek
Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.
K zobrazení výsledku je třeba se přihlásit.
Publikováno v:
BMC Bioinformatics, Vol 21, Iss S6, Pp 1-12 (2020)
Abstract Background Alignment-free methods for sequence comparisons have become popular in many bioinformatics applications, specifically in the estimation of sequence similarity measures to construct phylogenetic trees. Recently, the average common
Externí odkaz:
https://doaj.org/article/96db9fcf7ab54535b9a6b3d9e2ce192f
Publikováno v:
Biology, Vol 12, Iss 2, p 322 (2023)
Organisms are unique physical entities in which information is stored and continuously processed. The digital nature of DNA sequences enables the construction of a dynamic information reservoir. However, the distinction between the hardware and softw
Externí odkaz:
https://doaj.org/article/65102695c4194979af57f7d402caad8e
Autor:
Daniel Lichtblau
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-17 (2019)
Abstract Background Alignment-free methods of genomic comparison offer the possibility of scaling to large data sets of nucleotide sequences comprised of several thousand or more base pairs. Such methods can be used for purposes of deducing “nearby
Externí odkaz:
https://doaj.org/article/569f7b410275479d84853948056cdf8e
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-13 (2019)
Abstract Although Kraken’s k-mer-based approach provides a fast taxonomic classification of metagenomic sequence data, its large memory requirements can be limiting for some applications. Kraken 2 improves upon Kraken 1 by reducing memory usage by
Externí odkaz:
https://doaj.org/article/01cfbfa980fd45e5bd752c20bb115e08
Autor:
Raphaël R. Léonard, Marie Leleu, Mick Van Vlierberghe, Luc Cornet, Frédéric Kerff, Denis Baurain
Publikováno v:
PeerJ, Vol 9, p e11348 (2021)
TQMD is a tool for high-performance computing clusters which downloads, stores and produces lists of dereplicated prokaryotic genomes. It has been developed to counter the ever-growing number of prokaryotic genomes and their uneven taxonomic distribu
Externí odkaz:
https://doaj.org/article/b226476f4962420da9b2da04e36ed2cc