Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Zoltan A Tuza"'
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 4, p e1009987 (2022)
Biochemical interactions in systems and synthetic biology are often modeled with chemical reaction networks (CRNs). CRNs provide a principled modeling environment capable of expressing a huge range of biochemical processes. In this paper, we present
Externí odkaz:
https://doaj.org/article/19c214960dd94a4ca19891de3d5f1815
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-9 (2018)
The engineering of synthetic microbial communities necessitates the use of synthetic, orthogonal cell-to-cell communication channels. Here the authors present a library of characterised AHL-receiver devices and a software tool for the automatic ident
Externí odkaz:
https://doaj.org/article/7fbf81b208584a189c96c3c9f9de2a00
Publikováno v:
Synthetic biology (Oxford, England). 7(1)
Laboratory automation and mathematical optimization are key to improving the efficiency of synthetic biology research. While there are algorithms optimizing the construct designs and synthesis strategies for DNA assembly, the optimization of how DNA
Publikováno v:
PLoS computational biology. 18(4)
Biochemical interactions in systems and synthetic biology are often modeled with chemical reaction networks (CRNs). CRNs provide a principled modeling environment capable of expressing a huge range of biochemical processes. In this paper, we present
Publikováno v:
Synthetic Biology
We introduce a MATLAB-based simulation toolbox, called txtlsim, for an Escherichia coli-based Transcription–Translation (TX–TL) system. This toolbox accounts for several cell-free-related phenomena, such as resource loading, consumption and degra
Publikováno v:
Synthetic Biology. 6
Autor:
Zoltan A. Tuza, Guy-Bart Stan
Publikováno v:
ECC
Finding efficient methods to estimate model parameters or build models from time-series data is a central quest in Systems and Synthetic Biology. To aid this search, existing parameter estimation methods were adapted from other fields, or new ones we
Publikováno v:
Computer Physics Communications. 204:11-20
In this paper an algorithm is given to determine all possible structurally different linearly conjugate realizations of a given kinetic polynomial system. The solution is based on the iterative search for constrained dense realizations using linear p
Publikováno v:
IFAC-PapersOnLine. 49:194-200
Structural non-uniqueness of (bio) chemical reaction networks realizing a given kinetic dynamics has been known for a long time, but it is often overlooked in practice. However, without appropriate prior information, this phenomenon seriously hinders
Reliable in-silico design of synthetic gene networks necessitates novel approaches to model the process of protein synthesis under the influence of limited resources. We present such a novel protein synthesis model which originates from the Ribosome
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a57f85d71a866baf646481ba17e8d912
http://arxiv.org/abs/1610.04041
http://arxiv.org/abs/1610.04041