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Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

Autor: Li, Hongjie, Janssens, Jasper, De Waegeneer, Maxime, Kolluru, Sai Saroja, Davie, Kristofer, Gardeux, Vincent, Saelens, Wouter, David, Fabrice P. A., Brbić, Maria, Spanier, Katina, Leskovec, Jure, McLaughlin, Colleen N., Xie, Qijing, Jones, Robert C., Brueckner, Katja, Shim, Jiwon, Tattikota, Sudhir Gopal, Schnorrer, Frank, Rust, Katja, Nystul, Todd G., Carvalho-Santos, Zita, Ribeiro, Carlos, Pal, Soumitra, Mahadevaraju, Sharvani, Przytycka, Teresa M., Allen, Aaron M., Goodwin, Stephen F., Berry, Cameron W., Fuller, Margaret T., White-Cooper, Helen, Matunis, Erika L., DiNardo, Stephen, Galenza, Anthony, O’Brien, Lucy Erin, Dow, Julian A. T., Jasper, Heinrich, Oliver, Brian, Perrimon, Norbert, Deplancke, Bart, Quake, Stephen R., Luo, Liqun, Aerts, Stein, Agarwal, Devika, Ahmed-Braimah, Yasir, Arbeitman, Michelle, Ariss, Majd M., Augsburger, Jordan, Ayush, Kumar, Baker, Catherine C., Banisch, Torsten, Birker, Katja, Bodmer, Rolf, Bolival, Benjamin, Brantley, Susanna E., Brill, Julie A., Brown, Nora C., Buehner, Norene A., Cai, Xiaoyu Tracy, Cardoso-Figueiredo, Rita, Casares, Fernando, Chang, Amy, Clandinin, Thomas R., Crasta, Sheela, Desplan, Claude, Detweiler, Angela M., Dhakan, Darshan B., Donà, Erika, Engert, Stefanie, Floc’hlay, Swann, George, Nancy, González-Segarra, Amanda J., Groves, Andrew K., Gumbin, Samantha, Guo, Yanmeng, Harris, Devon E., Heifetz, Yael, Holtz, Stephen L., Horns, Felix, Hudry, Bruno, Hung, Ruei-Jiun, Jan, Yuh Nung, Jaszczak, Jacob S., Jefferis, Gregory S. X. E., Karkanias, Jim, Karr, Timothy L., Katheder, Nadja Sandra, Kezos, James, Kim, Anna A., Kim, Seung K., Kockel, Lutz, Konstantinides, Nikolaos, Kornberg, Thomas B., Krause, Henry M., Labott, Andrew Thomas, Laturney, Meghan, Lehmann, Ruth, Leinwand, Sarah, Li, Jiefu, Li, Joshua Shing Shun, Li, Kai, Li, Ke, Li, Liying, Li, Tun, Litovchenko, Maria, Liu, Han-Hsuan, Liu, Yifang, Lu, Tzu-Chiao, Manning, Jonathan, Mase, Anjeli, Matera-Vatnick, Mikaela, Matias, Neuza Reis, McDonough-Goldstein, Caitlin E., McGeever, Aaron, McLachlan, Alex D., Moreno-Roman, Paola, Neff, Norma, Neville, Megan, Ngo, Sang, Nielsen, Tanja, O’Brien, Caitlin E., Osumi-Sutherland, David, Özel, Mehmet Neset, Papatheodorou, Irene, Petkovic, Maja, Pilgrim, Clare, Pisco, Angela Oliveira, Reisenman, Carolina, Sanders, Erin Nicole, dos Santos, Gilberto, Scott, Kristin, Sherlekar, Aparna, Shiu, Philip, Sims, David, Sit, Rene V., Slaidina, Maija, Smith, Harold E., Sterne, Gabriella, Su, Yu-Han, Sutton, Daniel, Tamayo, Marco, Tan, Michelle, Tastekin, Ibrahim, Treiber, Christoph, Vacek, David, Vogler, Georg, Waddell, Scott, Wang, Wanpeng, Wilson, Rachel I., Wolfner, Mariana F., Wong, Yiu-Cheung E., Xie, Anthony, Xu, Jun, Yamamoto, Shinya, Yan, Jia, Yao, Zepeng, Yoda, Kazuki, Zhu, Ruijun, Zinzen, Robert P.

Publikováno v: Science
Science, 2022, 375 (6584), ⟨10.1126/science.abk2432⟩

FCA Consortium: Stein Aerts, Devika Agarwal, Yasir Ahmed-Braimah, Aaron M. Allen, Michelle Arbeitman, Majd M. Ariss, Jordan Augsburger, Kumar Ayush, Catherine C. Baker, Torsten Banisch, Cameron W. Berry, Katja Birker, Rolf Bodmer, Benjamin Bolival, S

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a252c44381f3aea4b5303ba386c6b0e5
https://cnrs.hal.science/hal-03795698/file/FCA_paper_MainTextV2.pdf

McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes

Autor: Hafez, Dina, Karabacak, Aslihan, Krueger, Sabrina, Hwang, Yih-Chii, Wang, Li-San, Zinzen, Robert P., Ohler, Uwe

Publikováno v: Genome Biology, Vol 18, Iss 1, Pp 1-21 (2017)
Genome Biology

Transcriptional enhancers regulate spatio-temporal gene expression. While genomic assays can identify putative enhancers en masse, assigning target genes is a complex challenge. We devised a machine learning approach, McEnhancer, which links target g

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::98cce7bd976d8b4d1fa58da50f2d4984
http://link.springer.com/article/10.1186/s13059-017-1316-x

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