Species Tree Estimation from Gene Trees by Minimizing Deep Coalescence and Maximizing Quartet Consistency: A Comparative Study and the Presence of Pseudo Species Tree Terraces.

Autor: Farah IT; Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka 1205, Bangladesh., Islam M; Applied Statistics and Data Science (ASDS), Department of Statistics, Jahangirnagar University, Dhaka 1342, Bangladesh., Zinat KT; Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka 1205, Bangladesh.; Department of Computer Science, University of Maryland, 8125 Paint Branch Drive, College Park, MD 20742, USA., Rahman AH; Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka 1205, Bangladesh., Bayzid S; Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka 1205, Bangladesh.

Publikováno v: Systematic biology [Syst Biol] 2021 Oct 13; Vol. 70 (6), pp. 1213-1231.

Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data.

Autor: Mahbub, Sazan, Sawmya, Shashata, Saha, Arpita, Reaz, Rezwana, Rahman, M. Sohel, Bayzid, Md. Shamsuzzoha

Publikováno v: Journal of Computational Biology; Nov2022, Vol. 29 Issue 11, p1156-1172, 17p