Zobrazeno 1 - 10
of 193
pro vyhledávání: '"Zhibin, Ning"'
Autor:
Montaser, Ahmed B., Gao, Fangyuan, Peters, Danielle, Vainionpää, Katri, Zhibin, Ning, Skowronska-Krawczyk, Dorota, Figeys, Daniel, Palczewski, Krzysztof, Leinonen, Henri
Publikováno v:
In Molecular & Cellular Proteomics November 2024 23(11)
Autor:
Leyuan Li, Tong Wang, Zhibin Ning, Xu Zhang, James Butcher, Joeselle M. Serrana, Caitlin M. A. Simopoulos, Janice Mayne, Alain Stintzi, David R. Mack, Yang-Yu Liu, Daniel Figeys
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)
Abstract Functional redundancy is a key ecosystem property representing the fact that different taxa contribute to an ecosystem in similar ways through the expression of redundant functions. The redundancy of potential functions (or genome-level func
Externí odkaz:
https://doaj.org/article/5d3f124ec93b4a05b0683ec979cc01bb
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 4228-4237 (2023)
Metaproteomics has increasingly been applied to study functional changes in the human gut microbiome. Peptide identification is an important step in metaproteomics research, with sequence database search (SDS) and spectral library search (SLS) as the
Externí odkaz:
https://doaj.org/article/5f18163573f046c98476f2cee08c0dc0
Publikováno v:
Gut Microbes, Vol 14, Iss 1 (2022)
Biobanking of live microbiota is becoming indispensable for mechanistic and clinical investigations of drug–microbiome interactions and fecal microbiota transplantation. However, there is a lack of methods to rapidly and systematically evaluate whe
Externí odkaz:
https://doaj.org/article/97ec9ff007334d97bdca433034368190
Autor:
Zhongzhi Sun, Wenju Wang, Leyuan Li, Xu Zhang, Zhibin Ning, Janice Mayne, Krystal Walker, Alain Stintzi, Daniel Figeys
Publikováno v:
Microbiology Spectrum, Vol 10, Iss 4 (2022)
ABSTRACT The composition and function of the human gut microbiome are often associated with health and disease status. Sugar substitute sweeteners are widely used food additives, although many studies using animal models have linked sweetener consump
Externí odkaz:
https://doaj.org/article/e9d08aa8342442bdb97e23abc9d97adc
Autor:
Caitlin M. A. Simopoulos, Zhibin Ning, Leyuan Li, Mona M. Khamis, Xu Zhang, Mathieu Lavallée-Adam, Daniel Figeys
Publikováno v:
mSystems, Vol 7, Iss 4 (2022)
ABSTRACT Metaproteomics is used to explore the functional dynamics of microbial communities. However, acquiring metaproteomic data by tandem mass spectrometry (MS/MS) is time-consuming and resource-intensive, and there is a demand for computational m
Externí odkaz:
https://doaj.org/article/43bf827453d94284a6a49138e96d67a1
Publikováno v:
iMeta, Vol 1, Iss 2, Pp n/a-n/a (2022)
Abstract Metaproteomics is a recently thriving technique that studies the collection of proteins in complex microbiomes of the human, animal, plant, and environment. The bioinformatics workflow required for metaproteomics research, from the database
Externí odkaz:
https://doaj.org/article/3f166c27e9754cee8e9cdc411350b41f
Autor:
Leyuan Li, Lu Chang, Xu Zhang, Zhibin Ning, Janice Mayne, Yang Ye, Alain Stintzi, Jia Liu, Daniel Figeys
Publikováno v:
Gut Microbes, Vol 11, Iss 5, Pp 1348-1361 (2020)
The understanding of the effects of compounds on the gut microbiome is limited. In particular, it is unclear whether structurally similar compounds would have similar or distinct effects on the gut microbiome. Here, we selected berberine (BBR), an is
Externí odkaz:
https://doaj.org/article/bed388db7f714f4caaab14c521aec74f
Autor:
Xu Zhang, Zhibin Ning, Janice Mayne, Yidai Yang, Shelley A. Deeke, Krystal Walker, Charles L. Farnsworth, Matthew P. Stokes, Jean-François Couture, David Mack, Alain Stintzi, Daniel Figeys
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Intestinal microbiota is increasingly reported to influence human health, but little is known on how its functions are regulated. Here the authors characterize microbiome protein acetylation and demonstrate its potential roles in shaping gut microbia
Externí odkaz:
https://doaj.org/article/8156c241c00f4392889e3f4fe586f531
Publikováno v:
Microbiome, Vol 8, Iss 1, Pp 1-16 (2020)
Abstract Background Human-targeted drugs may exert off-target effects or can be repurposed to modulate the gut microbiota. However, our understanding of such effects is limited due to a lack of rapid and scalable assay to comprehensively assess micro
Externí odkaz:
https://doaj.org/article/acd0b02b76fa49b2bcf992e8a5839543