Zobrazeno 1 - 10
of 36
pro vyhledávání: '"Zhenjiang Z. Xu"'
Autor:
Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, Stefan Janssen, Francesco Asnicar, Jon G. Sanders, Pedro Belda-Ferre, Gabriel A. Al-Ghalith, Evguenia Kopylova, Daniel McDonald, Tomasz Kosciolek, John B. Yin, Shi Huang, Nimaichand Salam, Jian-Yu Jiao, Zijun Wu, Zhenjiang Z. Xu, Kalen Cantrell, Yimeng Yang, Erfan Sayyari, Maryam Rabiee, James T. Morton, Sheila Podell, Dan Knights, Wen-Jun Li, Curtis Huttenhower, Nicola Segata, Larry Smarr, Siavash Mirarab, Rob Knight
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-14 (2019)
The authors build a reference phylogeny of 10,575 evenly-sampled bacterial and archaeal genomes, based on 381 markers. The results indicate a remarkably closer evolutionary proximity between Archaea and Bacteria than previous estimates that used fewe
Externí odkaz:
https://doaj.org/article/963471f628f44741a9d932ae0fd75f6b
Autor:
Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W. Dang, Vanessa V. Phelan, Robert A. Quinn, Anton Bankevich, John T. Chang, Tariq M. Rana, Douglas J. Conrad, William J. Sandborn, Larry Smarr, Pieter C. Dorrestein, Pavel A. Pevzner, Rob Knight
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-14 (2019)
Abstract As metagenomic studies move to increasing numbers of samples, communities like the human gut may benefit more from the assembly of abundant microbes in many samples, rather than the exhaustive assembly of fewer samples. We term this approach
Externí odkaz:
https://doaj.org/article/42e8537276ff4a9bba279cd526759a65
Autor:
Cyrielle Caussy, Anupriya Tripathi, Greg Humphrey, Shirin Bassirian, Seema Singh, Claire Faulkner, Ricki Bettencourt, Emily Rizo, Lisa Richards, Zhenjiang Z. Xu, Michael R. Downes, Ronald M. Evans, David A. Brenner, Claude B. Sirlin, Rob Knight, Rohit Loomba
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-9 (2019)
Development of cirrhosis in individuals with non-alcoholic fatty liver disease can predict mortality. Here the authors used a unique twin and family cohort to identify a gut microbiome-derived 16sRNA signature that can detect cirrhosis in individuals
Externí odkaz:
https://doaj.org/article/bfa482921c154256a6a959d280aacf44
Autor:
Amir Zarrinpar, Amandine Chaix, Zhenjiang Z. Xu, Max W. Chang, Clarisse A. Marotz, Alan Saghatelian, Rob Knight, Satchidananda Panda
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-13 (2018)
Antibiotic-induced microbiome depletion is one of the most common approaches to modulate the gut microbiome. Here the authors demonstrate that it affects gut homeostasis and glucose metabolism by decreasing luminal short chain fatty acids and leading
Externí odkaz:
https://doaj.org/article/a5e2a93dd23c4ffd9f9cfa80ad8db294
Autor:
Yang L; College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China; Guangdong Provincial Key Laboratory for Crop Germplasm Resources Preservation and Utilization, Agro-biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China., Zhang L; College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China., Zhang Q; Guangdong Provincial Key Laboratory for Crop Germplasm Resources Preservation and Utilization, Agro-biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China., Wei J; College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China; Guangdong Provincial Key Laboratory for Crop Germplasm Resources Preservation and Utilization, Agro-biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China., Zhao X; College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China., Zheng Z; College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, 510642, Guangdong, China., Chen B; Guangdong Provincial Key Laboratory for Crop Germplasm Resources Preservation and Utilization, Agro-biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China. Electronic address: chenbingxian@gdaas.cn., Xu Z; College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China. Electronic address: zhenjiangxu521@scau.edu.cn.
Publikováno v:
Plant physiology and biochemistry : PPB [Plant Physiol Biochem] 2024 Sep; Vol. 214, pp. 108895. Date of Electronic Publication: 2024 Jul 04.
Publikováno v:
Optics express [Opt Express] 2024 May 06; Vol. 32 (10), pp. 17942-17952.
Autor:
Fu T; Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Huan T; Department of Chemistry, UBC Faculty of Science, Vancouver Campus, Vancouver, BC V6T 1Z4, Canada., Rahman G; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA 92093, USA., Zhi H; Department of Pediatrics, University of California, San Diego, La Jolla, CA 92093, USA., Xu Z; UCSD Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093, USA., Oh TG; Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Guo J; Department of Chemistry, UBC Faculty of Science, Vancouver Campus, Vancouver, BC V6T 1Z4, Canada., Coulter S; Storr Liver Centre, Westmead Institute for Medical Research and Sydney Medical School, University of Sydney, Westmead, NSW 2145, Australia., Tripathi A; UCSD Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093, USA., Martino C; Department of Pediatrics, University of California, San Diego, La Jolla, CA 92093, USA; UCSD Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093, USA., McCarville JL; Molecular and Systems Physiology Laboratory, Gene Expression Laboratory, NOMIS Center for Immunobiology and Microbial Pathogenesis, Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Zhu Q; UCSD Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093, USA., Cayabyab F; Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Low B; Department of Chemistry, UBC Faculty of Science, Vancouver Campus, Vancouver, BC V6T 1Z4, Canada., He M; Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Xing S; Department of Chemistry, UBC Faculty of Science, Vancouver Campus, Vancouver, BC V6T 1Z4, Canada., Vargas F; UCSD Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093, USA., Yu RT; Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Atkins A; Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Liddle C; Storr Liver Centre, Westmead Institute for Medical Research and Sydney Medical School, University of Sydney, Westmead, NSW 2145, Australia., Ayres J; Molecular and Systems Physiology Laboratory, Gene Expression Laboratory, NOMIS Center for Immunobiology and Microbial Pathogenesis, Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Raffatellu M; Department of Pediatrics, University of California, San Diego, La Jolla, CA 92093, USA; UCSD Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093, USA; Chiba University-UC San Diego Center for Mucosal Immunity, Allergy, and Vaccines (CU-UCSD cMAV), La Jolla, CA 92093, USA., Dorrestein PC; UCSD Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093, USA; Department of Engineering, University of California, San Diego, La Jolla, CA 92093, USA; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093, USA., Downes M; Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Knight R; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA 92093, USA; Department of Pediatrics, University of California, San Diego, La Jolla, CA 92093, USA; UCSD Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093, USA; Department of Engineering, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: robknight@eng.ucsd.edu., Evans RM; Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA. Electronic address: evans@salk.edu.
Publikováno v:
Cell reports [Cell Rep] 2023 Aug 29; Vol. 42 (8), pp. 112997. Date of Electronic Publication: 2023 Aug 22.
Autor:
Yin J; College of Agriculture, South China Agricultural University, Guangzhou, China., Zhao H; Institute for Agri-food Standards and Testing Technology, Shanghai Academy of Agricultural Sciences, Shanghai, China., Wu X; Development Center of Science and Technology, Ministry of Agriculture and Rural Affairs, Beijing, China., Ma Y; Development Center of Science and Technology, Ministry of Agriculture and Rural Affairs, Beijing, China., Zhang J; Institute for Agri-food Standards and Testing Technology, Shanghai Academy of Agricultural Sciences, Shanghai, China., Li Y; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, China., Shao G; Research and development center, Fujian Jinpin Agricultural Technology Co., Ltd, Fuzhou, China., Chen H; Institute for Agri-food Standards and Testing Technology, Shanghai Academy of Agricultural Sciences, Shanghai, China., Han R; Development Center of Science and Technology, Ministry of Agriculture and Rural Affairs, Beijing, China., Xu Z; College of Agriculture, South China Agricultural University, Guangzhou, China.
Publikováno v:
Frontiers in plant science [Front Plant Sci] 2023 Feb 06; Vol. 14, pp. 1112748. Date of Electronic Publication: 2023 Feb 06 (Print Publication: 2023).
Autor:
Liu H; National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong, China.; College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, China., Rao D; College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, China., Guo T; National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong, China., Gangurde SS; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.; Crop Protection and Management Research Unit, USDA-ARS, Tifton, GA, United States.; Department of Plant Pathology, University of Georgia, Tifton, GA, United States., Hong Y; Guangdong Provincial Key Laboratory for Crops Genetic Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China., Chen M; College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, China., Huang Z; College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, China., Jiang Y; College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, China., Xu Z; College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, China., Chen Z; National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong, China.
Publikováno v:
Frontiers in genetics [Front Genet] 2022 Aug 26; Vol. 13, pp. 945015. Date of Electronic Publication: 2022 Aug 26 (Print Publication: 2022).
Autor:
Dong X; Department of Orthopedics, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, China.; Key Laboratory of Orthopedics of Zhejiang Province, The Second Affiliated Hospital of Wenzhou Medical University, Wenzhou, China., He Z; Department of Orthopedics, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, China.; Key Laboratory of Orthopedics of Zhejiang Province, The Second Affiliated Hospital of Wenzhou Medical University, Wenzhou, China., Xiang G; Department of Orthopedics, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, China.; Key Laboratory of Orthopedics of Zhejiang Province, The Second Affiliated Hospital of Wenzhou Medical University, Wenzhou, China., Cai L; Department of Orthopedics, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, China.; Key Laboratory of Orthopedics of Zhejiang Province, The Second Affiliated Hospital of Wenzhou Medical University, Wenzhou, China., Xu Z; Department of Orthopedics, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, China.; Key Laboratory of Orthopedics of Zhejiang Province, The Second Affiliated Hospital of Wenzhou Medical University, Wenzhou, China., Mao C; Department of Orthopedics, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, China.; Key Laboratory of Orthopedics of Zhejiang Province, The Second Affiliated Hospital of Wenzhou Medical University, Wenzhou, China., Feng Y; Department of Orthopedics, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, China.; Key Laboratory of Orthopedics of Zhejiang Province, The Second Affiliated Hospital of Wenzhou Medical University, Wenzhou, China.
Publikováno v:
Journal of cellular physiology [J Cell Physiol] 2020 Dec; Vol. 235 (12), pp. 9933-9945. Date of Electronic Publication: 2020 Jun 15.