Zobrazeno 1 - 10
of 27
pro vyhledávání: '"Zhangyi Ouyang"'
Autor:
Shengqing Stan Gu, Xiaoqing Wang, Xihao Hu, Peng Jiang, Ziyi Li, Nicole Traugh, Xia Bu, Qin Tang, Chenfei Wang, Zexian Zeng, Jingxin Fu, Cliff Meyer, Yi Zhang, Paloma Cejas, Klothilda Lim, Jin Wang, Wubing Zhang, Collin Tokheim, Avinash Das Sahu, Xiaofang Xing, Benjamin Kroger, Zhangyi Ouyang, Henry Long, Gordon J. Freeman, Myles Brown, X. Shirley Liu
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-28 (2020)
Abstract Background Immune checkpoint blockade (ICB) therapy has improved patient survival in a variety of cancers, but only a minority of cancer patients respond. Multiple studies have sought to identify general biomarkers of ICB response, but eluci
Externí odkaz:
https://doaj.org/article/b3244746e20a48e2bb9e322dbec655a3
Autor:
Jian Zhang, Xihao Hu, Jin Wang, Avinash Das Sahu, David Cohen, Li Song, Zhangyi Ouyang, Jingyu Fan, Binbin Wang, Jingxin Fu, Shengqing Gu, Moshe Sade-Feldman, Nir Hacohen, Wuju Li, Xiaomin Ying, Bo Li, X. Shirley Liu
Publikováno v:
Genome Medicine, Vol 11, Iss 1, Pp 1-11 (2019)
Abstract Background Acute myeloid leukemia (AML), caused by the abnormal proliferation of immature myeloid cells in the blood or bone marrow, is one of the most common hematologic malignancies. Currently, the interactions between malignant myeloid ce
Externí odkaz:
https://doaj.org/article/451f73e2e69f431db98923ca1e3a0825
Publikováno v:
PLoS ONE, Vol 11, Iss 12, p e0168607 (2016)
Accurately identifying the binding sites of transcription factors (TFs) is crucial to understanding the mechanisms of transcriptional regulation and human disease. We present incorporating Find Occurrence of Regulatory Motifs (iFORM), an easy-to-use
Externí odkaz:
https://doaj.org/article/fdd332da954e4582936ae829575df9d1
Autor:
X. Shirley Liu, Bo Li, Ming Tang, Heng Li, Kenneth J. Livak, Xihao Hu, Gali Bai, Jennifer Altreuter, Yang Cao, David Cohen, Zhangyi Ouyang, Li Song
Supplementary Data from Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::08ed4d8d70981ab3df91d3349363625f
https://doi.org/10.1158/2326-6066.22544673
https://doi.org/10.1158/2326-6066.22544673
Autor:
X. Shirley Liu, Bo Li, Ming Tang, Heng Li, Kenneth J. Livak, Xihao Hu, Gali Bai, Jennifer Altreuter, Yang Cao, David Cohen, Zhangyi Ouyang, Li Song
We applied our computational algorithm TRUST4 to assemble immune receptor (T-cell receptor/B-cell receptor) repertoires from approximately 12,000 RNA sequencing samples from The Cancer Genome Atlas and seven immunotherapy studies. From over 35 millio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7189dcc59f29f5bf1a9eba2715dc674f
https://doi.org/10.1158/2326-6066.c.6550716.v1
https://doi.org/10.1158/2326-6066.c.6550716.v1
Autor:
X. Shirley Liu, Bo Li, Ming Tang, Heng Li, Kenneth J. Livak, Xihao Hu, Gali Bai, Jennifer Altreuter, Yang Cao, David Cohen, Zhangyi Ouyang, Li Song
Supplementary Figure from Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2a7c98dd69c4052cef17b7ecb2e70d63
https://doi.org/10.1158/2326-6066.22544670.v1
https://doi.org/10.1158/2326-6066.22544670.v1
The widespread use of nuclear energy and nuclear facilities has dramatically increased the risks associated with nuclear radiation exposure. Effective radioprotective agents that are easy to administer and have low toxicity are urgently needed to min
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3efb00008ec7ad82752a90c03cf3b68d
https://doi.org/10.21203/rs.3.rs-1771483/v1
https://doi.org/10.21203/rs.3.rs-1771483/v1
Autor:
Li Song, Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai, Xihao Hu, Kenneth J. Livak, Heng Li, Ming Tang, Bo Li, X. Shirley Liu
Publikováno v:
Cancer Immunol Res
We applied our computational algorithm TRUST4 to assemble immune receptor (T-cell receptor/B-cell receptor) repertoires from approximately 12,000 RNA sequencing samples from The Cancer Genome Atlas and seven immunotherapy studies. From over 35 millio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::77613cdf4dc0a2f1ea39b4c13081a725
https://europepmc.org/articles/PMC9299271/
https://europepmc.org/articles/PMC9299271/
Publikováno v:
Nature Methods. 18:627-630
We introduce the TRUST4 open-source algorithm for reconstruction of immune receptor repertoires in αβ/γδ T cells and B cells from RNA-sequencing (RNA-seq) data. Compared with competing methods, TRUST4 supports both FASTQ and BAM format and is fas
Autor:
Shuai Zhou, Lu Liu, Ran Huo, Qiqi Cao, Xuesong Sui, Zhangyi Ouyang, Mingrui Li, Bin Shen, Li Liu, Qianneng Lu, Yuanlin He, Yumeng Cao, Wenjie Shu, Meijie Qi, Yue Hu
Publikováno v:
Cell Death Differ
KIAA1429 (also known as vir-like m(6)A methyltransferase-associated protein (VIRMA)), a newly identified component of the RNA m(6)A methyltransferase complex, plays critical roles in guiding region-selective m(6)A deposition. However, in mammals, whe