Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens.

Autor: Barnett R; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark., Westbury MV; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark. Electronic address: m.westbury@sund.ku.dk., Sandoval-Velasco M; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark., Vieira FG; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark., Jeon S; Korean Genomics Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea; Department of Biomedical Engineering, School of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea., Zazula G; Yukon Palaeontology Program, Department of Tourism and Culture, Government of Yukon, PO Box 2703, Whitehorse, YT Y1A 2C6, Canada., Martin MD; Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim NO-7491, Norway., Ho SYW; School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia., Mather N; School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia., Gopalakrishnan S; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark; Center for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, Øster Farimagsgade 5A, Copenhagen 1352, Denmark., Ramos-Madrigal J; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark; Center for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, Øster Farimagsgade 5A, Copenhagen 1352, Denmark., de Manuel M; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Dr. Aiguader 88, Barcelona 08003, Spain., Zepeda-Mendoza ML; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark; School of Medical and Dental Sciences, Institute of Microbiology and Infection, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK., Antunes A; CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos, s/n, Porto 4450-208, Portugal; Department of Biology, Faculty of Sciences, University of Porto, Porto 4169-007, Portugal., Baez AC; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark., De Cahsan B; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark., Larson G; The Palaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK., O'Brien SJ; Laboratory of Genomic Diversity, Center for Computer Technologies, ITMO University, 49 Kronverkskiy Pr., St. Petersburg 197101, Russia; Guy Harvey Oceanographic Center, Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, 8000 North Ocean Drive. Ft Lauderdale, FL 33004, USA., Eizirik E; Laboratory of Genomics and Molecular Biology, Escola de Ciências da Saúde e da Vida, PUCRS, Porto Alegre, RS, Brazil; INCT Ecologia, Evolução e Conservação da Biodiversidade (INCT-EECBio), Goiânia, GO, Brazil; Instituto Pró-Carnívoros, Atibaia, SP, Brazil., Johnson WE; Center for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Road, Front Royal, VA 22630, USA; The Walter Reed Biosystematics Unit, Museum Support Center MRC-534, Smithsonian Institution, 4210 Silver Hill Rd., Suitland, MD 20746-2863, USA; Walter Reed Army Institute of Research, 503 Robert Grant Avenue, Silver Spring, MD 20910, USA., Koepfli KP; Center for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Road, Front Royal, VA 22630, USA., Wilting A; Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke-Str. 17, Berlin 10315, Germany., Fickel J; Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke-Str. 17, Berlin 10315, Germany; Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Strasse 24-25, Potsdam 14476, Germany., Dalén L; Centre for Palaeogenetics, Svante Arrhenius väg 20C, Stockholm SE-10691, Sweden; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, Stockholm 10405, Sweden., Lorenzen ED; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark; Center for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, Øster Farimagsgade 5A, Copenhagen 1352, Denmark., Marques-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Dr. Aiguader 88, Barcelona 08003, Spain; CNAG-CRG, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Baldiri Reixac 4, Barcelona 08028, Spain; Institució Catalana de Recerca i Estudis Avançats, ICREA, Barcelona 08003, Spain; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Cerdanyola del Vallès, Barcelona 08193, Spain., Hansen AJ; Center for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, Øster Farimagsgade 5A, Copenhagen 1352, Denmark; Section for GeoGenetics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark., Zhang G; BGI-Shenzhen, Shenzhen 518083, China; Section for Ecology and Evolution, Department of Biology, Faculty of Science, University of Copenhagen, Universitetsparken 15, Copenhagen, Denmark; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China., Bhak J; Korean Genomics Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea; Department of Biomedical Engineering, School of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea; Clinomics, Inc., Ulsan 44919, Republic of Korea; Personal Genomics Institute (PGI), Genome Research Foundation (GRF), Osong 28160, Republic of Korea., Yamaguchi N; Institute of Tropical Biodiversity and Sustainable Development, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu 21030, Malaysia., Gilbert MTP; Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Øster Voldgade 5-7, Copenhagen, Denmark; Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim NO-7491, Norway; Center for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, Øster Farimagsgade 5A, Copenhagen 1352, Denmark. Electronic address: tgilbert@sund.ku.dk.

Publikováno v: Current biology : CB [Curr Biol] 2020 Dec 21; Vol. 30 (24), pp. 5018-5025.e5. Date of Electronic Publication: 2020 Oct 15.

The evolutionary history of extinct and living lions.

Autor: de Manuel M; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain., Barnett R; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark., Sandoval-Velasco M; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark., Yamaguchi N; Institute of Tropical Biodiversity and Sustainable Development, University Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia; lgdchief@gmail.com tomas.marques@upf.edu tgilbert@sund.ku.dk nobuyuki.yamaguchi@umt.edu.my., Garrett Vieira F; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark., Zepeda Mendoza ML; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.; School of Medical and Dental Sciences, Institute of Microbiology and Infection, University of Birmingham, B15 2TT Edgbaston, Birmingham, United Kingdom., Liu S; BGI-Shenzhen, 518083 Shenzhen, China., Martin MD; Norwegian University of Science and Technology (NTNU) University Museum, 7012 Trondheim, Norway., Sinding MS; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark., Mak SST; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark., Carøe C; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark., Liu S; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.; BGI-Shenzhen, 518083 Shenzhen, China., Guo C; BGI-Shenzhen, 518083 Shenzhen, China., Zheng J; BGI-Shenzhen, 518083 Shenzhen, China.; BGI Education Center, University of Chinese Academy of Sciences, 518083 Shenzhen, China., Zazula G; Yukon Palaeontology Program, Department of Tourism and Culture, Government of Yukon, Y1A 2C6 Whitehorse, Yukon, Canada., Baryshnikov G; Zoological Institute, Russian Academy of Sciences, 199034 St. Petersburg, Russia., Eizirik E; Laboratory of Genomics and Molecular Biology, Escola de Ciências da Saúde e da Vida, Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Porto Alegre, RS 90619-900, Brazil.; Instituto Nacional de Ciência e Tecnologia - Ecologia Evolução e Conservação da Biodiversidade (INCT-EECBio), Goiânia, GO 74690-900, Brazil.; Instituto Pró-Carnívoros, Atibaia, SP 12945-010, Brazil., Koepfli KP; Center for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA 22630., Johnson WE; Center for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA 22630.; The Walter Reed Biosystematics Unit, Museum Support Center MRC-534, Smithsonian Institution, Suitland, MD 20746-2863.; Walter Reed Army Institute of Research, Silver Spring, MD 20910., Antunes A; Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, 4450-208 Porto, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, 4169-007 Porto, Portugal., Sicheritz-Ponten T; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.; Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio), Faculty of Applied Sciences, Asian Institute of Medicine, Science and Technology (AIMST), 08100 Bedong, Kedah, Malaysia., Gopalakrishnan S; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark., Larson G; The Palaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology and the History of Art, University of Oxford, OX1 3QY Oxford, United Kingdom., Yang H; BGI-Shenzhen, 518083 Shenzhen, China.; James D. Watson Institute of Genome Science, 310008 Hangzhou, China., O'Brien SJ; Laboratory of Genomic Diversity, Center for Computer Technologies, ITMO (Information Technologies, Mechanics and Optics) University, 197101 St. Petersburg, Russia; lgdchief@gmail.com tomas.marques@upf.edu tgilbert@sund.ku.dk nobuyuki.yamaguchi@umt.edu.my.; Guy Harvey Oceanographic Center Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Ft. Lauderdale, FL 33004., Hansen AJ; Section for GeoGenetics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1350 Copenhagen, Denmark., Zhang G; BGI-Shenzhen, 518083 Shenzhen, China.; Section for Ecology and Evolution, Department of Biology, Faculty of Science, University of Copenhagen, 2100 Copenhagen, Denmark.; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 650223 Kunming, China., Marques-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain; lgdchief@gmail.com tomas.marques@upf.edu tgilbert@sund.ku.dk nobuyuki.yamaguchi@umt.edu.my.; Centre Nacional d'Anàlisi Genòmica, Centre for Genomic Regulation (CNAG-CRG), The Barcelona Institute of Science and Technology, 08028 Barcelona, Spain.; Institució Catalana de Recerca i Estudis Avançats (ICREA), 08003 Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, 08193 Cerdanyola del Vallès, Barcelona, Spain., Gilbert MTP; Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark; lgdchief@gmail.com tomas.marques@upf.edu tgilbert@sund.ku.dk nobuyuki.yamaguchi@umt.edu.my.; Norwegian University of Science and Technology (NTNU) University Museum, 7012 Trondheim, Norway.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2020 May 19; Vol. 117 (20), pp. 10927-10934. Date of Electronic Publication: 2020 May 04.

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.

Autor: Zepeda Mendoza ML; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. lisandracady@gmail.com., Xiong Z; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.; China National GeneBank, BGI-Shenzhen, Shenzhen, China., Escalera-Zamudio M; Department of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research (IZW), Berlin, Germany., Runge AK; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark., Thézé J; Department of Zoology, University of Oxford, Oxford, UK., Streicker D; Institute of Biodiversity, Animal Health and Comparative Medicine & MRC-University of Glasgow Centre for Virus Research, University of Glasgow, Glasgow, UK., Frank HK; Department of Biology, Stanford University, Stanford, CA, USA., Loza-Rubio E; Centro Nacional de Investigación Disciplinaria en Microbiología Animal-INIFAP, Ciudad de México, Mexico., Liu S; China National GeneBank, BGI-Shenzhen, Shenzhen, China., Ryder OA; San Diego Zoo Institute for Conservation Research, Escondido, CA, USA., Samaniego Castruita JA; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark., Katzourakis A; Department of Zoology, University of Oxford, Oxford, UK., Pacheco G; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark., Taboada B; Departamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mexico., Löber U; Department of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research (IZW), Berlin, Germany., Pybus OG; Department of Zoology, University of Oxford, Oxford, UK., Li Y; China National GeneBank, BGI-Shenzhen, Shenzhen, China., Rojas-Anaya E; Centro Nacional de Investigación Disciplinaria en Microbiología Animal-INIFAP, Ciudad de México, Mexico., Bohmann K; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark., Carmona Baez A; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.; Undergraduate Program for Genomic Sciences, Center for Genomic Sciences, National Autonomous University of Mexico, Cuernavaca, Mexico., Arias CF; Departamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mexico., Liu S; China National GeneBank, BGI-Shenzhen, Shenzhen, China., Greenwood AD; Department of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research (IZW), Berlin, Germany.; Department of Veterinary Medicine, Freie Universität Berlin, Berlin, Germany., Bertelsen MF; Center for Zoo and Wild Animal Health, Copenhagen Zoo, Frederiksberg, Denmark., White NE; Australian Wildlife Forensic Services, Department of Environment and Agriculture, Curtin University, Perth, Australia.; Trace and Environmental DNA Laboratory, Department of Environment and Agriculture, Curtin University, Perth, Australia., Bunce M; Australian Wildlife Forensic Services, Department of Environment and Agriculture, Curtin University, Perth, Australia.; Trace and Environmental DNA Laboratory, Department of Environment and Agriculture, Curtin University, Perth, Australia., Zhang G; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.; China National GeneBank, BGI-Shenzhen, Shenzhen, China.; Centre for Social Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark., Sicheritz-Pontén T; Center for Biological Sequence Analysis, Department of Bio and Health Informatics, Technical University of Denmark, Kongens Lyngby, Denmark. thomas@cbs.dtu.dk., Gilbert MPT; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. tgilbert@snm.ku.dk.; Trace and Environmental DNA Laboratory, Department of Environment and Agriculture, Curtin University, Perth, Australia. tgilbert@snm.ku.dk.; Norwegian University of Science and Technology, University Museum, Trondheim, Norway. tgilbert@snm.ku.dk.

Publikováno v: Nature ecology & evolution [Nat Ecol Evol] 2018 Apr; Vol. 2 (4), pp. 659-668. Date of Electronic Publication: 2018 Feb 19.

Next-generation biology: Sequencing and data analysis approaches for non-model organisms.

Autor: da Fonseca RR; The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. Electronic address: fonseca@binf.ku.dk., Albrechtsen A; The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark., Themudo GE; Section of Forensic Genetics, Department of Forensic Medicine, University of Copenhagen, Copenhagen, Denmark., Ramos-Madrigal J; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark., Sibbesen JA; The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark., Maretty L; The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark., Zepeda-Mendoza ML; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark., Campos PF; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark; CIMAR/CIIMAR, Centro Interdisciplinar de Investigação Marinha e Ambiental, Universidade do Porto, Rua dos Bragas 177, 4050-123 Porto, Portugal., Heller R; The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark., Pereira RJ; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.

Publikováno v: Marine genomics [Mar Genomics] 2016 Dec; Vol. 30, pp. 3-13. Date of Electronic Publication: 2016 May 13.

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses.

Autor: Zepeda-Mendoza ML; Evogenomics, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark. lisandracady@gmail.com., Bohmann K; Evogenomics, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark., Carmona Baez A; Evogenomics, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark.; Undergraduate Program on Genomic Sciences, Center for Genomic Sciences, National Autonomous University of Mexico (UNAM), Av. Universidad s/n Col. Chamilpa, 62210, Cuernavaca, Morelos, Mexico., Gilbert MT; Evogenomics, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark.

Publikováno v: BMC research notes [BMC Res Notes] 2016 May 03; Vol. 9, pp. 255. Date of Electronic Publication: 2016 May 03.