Data Mining, Quality and Management in the Life Sciences

Autor: Amonida, Zadissa, Rolf, Apweiler

Publikováno v: Methods in molecular biology (Clifton, N.J.). 2449

With the evermore emphasis put on open science and its invaluable benefits to the scientific community, it is no longer the case where a research project simply ends with a scientific publication. The benefits of data sharing and reproducibility of r

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::fa08cb299dcd689291d0c194e9640a83
https://pubmed.ncbi.nlm.nih.gov/35507257

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Ensembl 2019

Autor: Fiona Cunningham, Premanand Achuthan, Wasiu Akanni, James Allen, M Ridwan Amode, Irina M Armean, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, Carla Cummins, Claire Davidson, Kamalkumar Jayantilal Dodiya, Astrid Gall, Carlos García Girón, Laurent Gil, Tiago Grego, Leanne Haggerty, Erin Haskell, Thibaut Hourlier, Osagie G Izuogu, Sophie H Janacek, Thomas Juettemann, Mike Kay, Matthew R Laird, Ilias Lavidas, Zhicheng Liu, Jane E Loveland, José C Marugán, Thomas Maurel, Aoife C McMahon, Benjamin Moore, Joannella Morales, Jonathan M Mudge, Michael Nuhn, Denye Ogeh, Anne Parker, Andrew Parton, Mateus Patricio, Ahamed Imran Abdul Salam, Bianca M Schmitt, Helen Schuilenburg, Dan Sheppard, Helen Sparrow, Eloise Stapleton, Marek Szuba, Kieron Taylor, Glen Threadgold, Anja Thormann, Alessandro Vullo, Brandon Walts, Andrea Winterbottom, Amonida Zadissa, Marc Chakiachvili, Adam Frankish, Sarah E Hunt, Myrto Kostadima, Nick Langridge, Fergal J Martin, Matthieu Muffato, Emily Perry, Magali Ruffier, Daniel M Staines, Stephen J Trevanion, Bronwen L Aken, Andrew D Yates, Daniel R Zerbino, Paul Flicek

Publikováno v: Nucleic Acids Research

The Ensembl project (https://www.ensembl.org) makes key genomic data sets available to the entire scientific community without restrictions. Ensembl seeks to be a fundamental resource driving scientific progress by creating, maintaining and updating

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::42bb0745f5f44e984bb1f2bbfd9fda58
http://europepmc.org/articles/PMC6323964

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

Autor: Kerstin Howe, Thomas M. Keane, Paul Flicek, David Thybert, Bronwen Aken, David Martín-Gálvez, Golbahar Yazdanifar, Christine Feig, Cristina Sisu, Duncan T. Odom, Son Pham, Stefanie Nachtweide, Laura Clarke, Ian Streeter, Carla Cummins, Varshith Chakrapani, Lilue Jingtao, Cock van Oosterhout, Ian T. Fiddes, Alvis Brazma, David J. Adams, William Chow, Frédéric Veyrunes, Maša Roller, Mikhail Kolmogorov, Christina M. Laukaitis, Ambre Aurore Josselin, Matthew Howell, Fergal J. Martin, Klara Stefflova, Benedict Paten, Mario Stanke, Matthieu Muffato, Mark Gerstein, Leo Goodstadt, Fengtang Yang, Michael A. Quail, Anthony G. Doran, Václav Janoušek, Ben J. Ward, Sarah Aldridge, Amonida Zadissa, Fabio C. P. Navarro, Robert C. Karn, Matthew Dunn, Wasiu Akanni

Publikováno v: Genome Research
Genome Research, Cold Spring Harbor Laboratory Press, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Genome Research, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩

Understanding the mechanisms driving lineage-specific evolution in both primates and rodents has been hindered by the lack of sister clades with a similar phylogenetic structure having high-quality genome assemblies. Here, we have created chromosome-

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::609fd04d943fa94511f96a605cf6355f
https://www.repository.cam.ac.uk/handle/1810/279898

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