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Akademický článek

Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (Nemadactylus macropterus)

Autor: Yvan Papa, Maren Wellenreuther, Mark A Morrison, Peter A Ritchie

Publikováno v: G3: Genes, Genomes, Genetics, Vol 13, Iss 2 (2022)

AbstractAlthough being some of the most valuable and heavily exploited wild organisms, few fisheries species have been studied at the whole-genome level. This is especially the case in New Zealand, where genomics resources are urgently needed to assi

Externí odkaz: https://doaj.org/article/6a3a2aaf6549403ea137b184eab88519

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Akademický článek

Genomic Stock Structure of the Marine Teleost Tarakihi (Nemadactylus macropterus) Provides Evidence of Potential Fine-Scale Adaptation and a Temperature-Associated Cline Amid Panmixia

Autor: Yvan Papa, Mark A. Morrison, Maren Wellenreuther, Peter A. Ritchie

Publikováno v: Frontiers in Ecology and Evolution, Vol 10 (2022)

Tarakihi (Nemadactylus macropterus) is an important fishery species with widespread distribution around New Zealand and off the southern coasts of Australia. However, little is known about whether the populations are locally adapted or genetically st

Externí odkaz: https://doaj.org/article/c2ea883f3db44918a7c99b4d51d561de

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Comparative genomics of tarakihi (Nemadactylus macropterus) and five New Zealand fish species: assembly contiguity affects the identification of genic features but not transposable elements

Autor: Yvan Papa, Maren Wellenreuther, Mark A. Morrison, Peter A. Ritchie

Comparative analysis of whole-genome sequences can provide valuable insights into the evolutionary patterns of diversification and adaptation of species, including the genome contents and the regions under selection. However, such studies are lacking

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::71cbe0c5e55e9cd09f92012b3135eac3
https://doi.org/10.1101/2022.08.01.502366

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How functionally diverse are fish in the deep? A comparison of fish communities in deep and shallow‐water systems

Autor: Raphaël Covain, Chelsey M. Beese, Jessica Hall, Victoria G. Carrington, Monique A. Ladds, Alice Rogers, Peter L. Horn, Yvan Papa

Publikováno v: Diversity and Distributions. 27:1208-1223

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::ff52369690fad3abf85ab5422a480c14
https://doi.org/10.1111/ddi.13268

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Fish communities critically depend on forest subsidies in small neotropical streams with high biodiversity value

Autor: Luc Allard, Yvan Papa, Pierre-Yves Le Bail, Anne Tréguier, Régis Vigouroux, Jean-Marc Roussel, Raphaël Covain

Publikováno v: Biotropica
Biotropica, Wiley, 2021, 13 p. ⟨10.1111/btp.12949⟩

International audience; Trophic support of species-rich tropical fish communities remains uncertain in small forest streams where dense and constant canopy cover strongly limits the solar radiation available to aquatic producers. We sampled >1300 fis

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e8fab62f6bb7a5d1b22088a08ba98ec
https://doi.org/10.1111/btp.12949

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Phylogeographic structure and historical demography of tarakihi (Nemadactylus macropterus) and king tarakihi (Nemadactylus n.sp.) in New Zealand

Autor: Mark Morrison, Yvan Papa, Alexander G. Halliwell, Maren Wellenreuther, Peter A. Ritchie

Publikováno v: New Zealand Journal of Marine and Freshwater Research. 56:247-271

Tarakihi (Nemadactylus macropterus) is a demersal fish that supports valuable commercial, recreational, and customary fisheries in New Zealand. However, little is known about its stock structure. T...

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::f72e95e259a2af82b1874a40ce0e6280
https://doi.org/10.1080/00288330.2021.1912119

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Genetic stock structure of New Zealand fish and the use of genomics in fisheries management: an overview and outlook

Autor: Noemie Valenza-Troubat, Peter A. Ritchie, Yvan Papa, Maren Wellenreuther, Tom Oosting

Publikováno v: New Zealand Journal of Zoology. 48:1-31

Sustainable management of wild fisheries requires accurate delineation of reproductively isolated stocks to avoid depletion of a commercially and ecologically important resource. However, there is ...

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::5ad73b3ac64fb415147bbab85bd7f352
https://doi.org/10.1080/03014223.2020.1788612

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Genomic stock structure of the marine teleost tarakihi (Nemadactylus macropterus) provides evidence of fine-scale adaptation and a temperature-associated cline amid panmixia

Autor: Yvan Papa, Mark A. Morrison, Maren Wellenreuther, Peter A. Ritchie

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::9dec99c9099166e8155895206831e238
https://doi.org/10.1101/2022.02.10.479861

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Genetic landscape clustering of a large DNA barcoding dataset reveals shared patterns of genetic divergence among freshwater fishes of the Maroni Basin

Autor: Pierre-Yves Le Bail, Raphaël Covain, Yvan Papa

Publikováno v: Molecular Ecology Resources
Molecular Ecology Resources, Wiley/Blackwell, 2021, ⟨10.1111/1755-0998.13402⟩

Version of record in Molecular Ecology Resources: https://doi.org/10.1111/1755-0998.13402 The Maroni is one of the most speciose basins of the Guianas and hosts a megadiverse freshwater fish community. Although taxonomical references exist for both t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f77ea92d9bb013d1a4f6c8aaa0ecc45
https://doi.org/10.22541/au.159985951.13372696

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