Zobrazeno 1 - 10 of 47 pro vyhledávání: '"Yusuke Kanematsu"'
1
Akademický článek
Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network
Autor: Hiroko X. Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano
Publikováno v: Biomolecules, Vol 13, Iss 1, p 137 (2023)
Structure–function relationships in proteins have been one of the crucial scientific topics in recent research. Heme proteins have diverse and pivotal biological functions. Therefore, clarifying their structure–function correlation is significant
Externí odkaz: https://doaj.org/article/0ed8187b3aa84f30932efb9bd67bf713
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2
Akademický článek
Elucidation of the Correlation between Heme Distortion and Tertiary Structure of the Heme-Binding Pocket Using a Convolutional Neural Network
Autor: Hiroko X. Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano
Publikováno v: Biomolecules, Vol 12, Iss 9, p 1172 (2022)
Heme proteins serve diverse and pivotal biological functions. Therefore, clarifying the mechanisms of these diverse functions of heme is a crucial scientific topic. Distortion of heme porphyrin is one of the key factors regulating the chemical proper
Externí odkaz: https://doaj.org/article/380a0de9ffe946d6b0109245c434ab44
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3
Akademický článek
Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate
Autor: Takehiko Tosha, Takashi Nomura, Takuma Nishida, Naoya Saeki, Kouta Okubayashi, Raika Yamagiwa, Michihiro Sugahara, Takanori Nakane, Keitaro Yamashita, Kunio Hirata, Go Ueno, Tetsunari Kimura, Tamao Hisano, Kazumasa Muramoto, Hitomi Sawai, Hanae Takeda, Eiichi Mizohata, Ayumi Yamashita, Yusuke Kanematsu, Yu Takano, Eriko Nango, Rie Tanaka, Osamu Nureki, Osami Shoji, Yuka Ikemoto, Hironori Murakami, Shigeki Owada, Kensuke Tono, Makina Yabashi, Masaki Yamamoto, Hideo Ago, So Iwata, Hiroshi Sugimoto, Yoshitsugu Shiro, Minoru Kubo
Publikováno v: Nature Communications, Vol 8, Iss 1, Pp 1-9 (2017)
Using photosensitive caged-compound for femtosecond crystallography at X-ray free electron lasers would allow the structure determination of reaction intermediates. Here the authors demonstrate the feasibility of this approach with a caged NO-compoun
Externí odkaz: https://doaj.org/article/09d185f659f54420bd7260a89d764ebf
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4
Akademický článek
Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein
Autor: Yusuke Kanematsu, Hironari Kamikubo, Mikio Kataoka, Masanori Tachikawa
Publikováno v: Computational and Structural Biotechnology Journal, Vol 14, Iss C, Pp 16-19 (2016)
Photoactive yellow protein (PYP) has a characteristic hydrogen bond (H bond) between p-coumaric acid chromophore and Glu46, whose OH bond length has been observed to be 1.21 Å by the neutron diffraction technique [Proc. Natl. Acad. Sci. 106, 440–4
Externí odkaz: https://doaj.org/article/384f61a959af48f8963dd8d7b3491033
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5
Akademický článek
Solvated Ba2+ with square antiprismatic and cubic coordination geometries.
Autor: Ayano Umakoshi, Takuo Minato, Yusuke Kanematsu, Masahiro Sadakane
Publikováno v: Chemistry Letters; Jul2024, Vol. 53 Issue 7, p1-4, 4p
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7
Hydrogen/Deuterium Transfer from Anisole to Methoxy Radicals: A Theoretical Study of a Deuterium-Labeled Drug Model
Autor: Yuka Kimura, Yusuke Kanematsu, Hiroki Sakagami, David S. Rivera Rocabado, Tomomi Shimazaki, Masanori Tachikawa, Takayoshi Ishimoto
Publikováno v: The Journal of Physical Chemistry A. 126:155-163
Recently, deuterium-labeled drugs, such as deutetrabenazine, have attracted considerable attention. Consequently, understanding the reaction mechanisms of deuterium-labeled drugs is crucial, both fundamentally and for real applications. To understand
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::64d0d9ada66d62a2b0c3c7ff0dd9d518
https://doi.org/10.1021/acs.jpca.1c08514
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8
Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network
Autor: Hiroko X. Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano
Publikováno v: Biomolecules; Volume 13; Issue 1; Pages: 137
Structure–function relationships in proteins have been one of the crucial scientific topics in recent research. Heme proteins have diverse and pivotal biological functions. Therefore, clarifying their structure–function correlation is significant
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a2171ecdd51670eb73a1e73a4003eafc
https://doi.org/10.20944/preprints202212.0010.v1
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9
Structures and mechanisms of actin ATP hydrolysis
Autor: Yusuke Kanematsu, Akihiro Narita, Toshiro Oda, Ryotaro Koike, Motonori Ota, Yu Takano, Kei Moritsugu, Ikuko Fujiwara, Kotaro Tanaka, Hideyuki Komatsu, Takayuki Nagae, Nobuhisa Watanabe, Mitsusada Iwasa, Yuichiro Maéda, Shuichi Takeda
Publikováno v: Proceedings of the National Academy of Sciences. 119
The major cytoskeleton protein actin undergoes cyclic transitions between the monomeric G-form and the filamentous F-form, which drive organelle transport and cell motility. This mechanical work is driven by the ATPase activity at the catalytic site
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b6b857e9ff211bd8a7f6e07931052a6d
https://doi.org/10.1073/pnas.2122641119
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