Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Yury V. Kondrakhin"'
Publikováno v:
PLoS ONE, Vol 15, Iss 12, p e0243332 (2020)
Creating a complete picture of the regulation of transcription seems to be an urgent task of modern biology. Regulation of transcription is a complex process carried out by transcription factors (TFs) and auxiliary proteins. Over the past decade, ChI
Externí odkaz:
https://doaj.org/article/c10f56ae1f2942dfa6e287bfa9e455fa
Autor:
Semyon K Kolmykov, Yury V Kondrakhin, Ivan S Yevshin, Ruslan N Sharipov, Anna S Ryabova, Fedor A Kolpakov
Publikováno v:
PLoS ONE, Vol 14, Iss 8, p e0221760 (2019)
Chromatin immunoprecipitation followed by sequencing, i.e. ChIP-Seq, is a widely used experimental technology for the identification of functional protein-DNA interactions. Nowadays, such databases as ENCODE, GTRD, ChIP-Atlas and ReMap systematically
Externí odkaz:
https://doaj.org/article/a65ff55dce9c44bf900f5299459af02e
Autor:
Elena Kutumova, Yury V. Kondrakhin, Ilya R. Akberdin, Alexander E. Kel, Ivan S. Yevshin, llya Kiselev, Semyon K. Kolmykov, Fedor A. Kolpakov, Anna S. Ryabova, S. S. Pintus, Nikita Mandrik, Ruslan N. Sharipov, Timur A. Kashapov
Publikováno v:
Nucleic Acids Research
BioUML (homepage: http://www.biouml.org, main public server: https://ict.biouml.org) is a web-based integrated environment (platform) for systems biology and the analysis of biomedical data generated by omics technologies. The BioUML vision is to pro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b4d14e76ea5c323c839873e678e8cb0c
http://europepmc.org/articles/PMC6602424
http://europepmc.org/articles/PMC6602424
Autor:
Alexander E. Kel, Ivan V. Kulakovskiy, Ruslan N. Sharipov, Ivan S. Yevshin, Yury V. Kondrakhin, Mikhail A. Kulyashov, Semyon K. Kolmykov, Fedor A. Kolpakov, Vsevolod J. Makeev
Publikováno v:
Nucleic Acids Research
The Gene Transcription Regulation Database (GTRD; http://gtrd.biouml.org/) contains uniformly annotated and processed NGS data related to gene transcription regulation: ChIP-seq, ChIP-exo, DNase-seq, MNase-seq, ATAC-seq and RNA-seq. With the latest r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cd5544d1903fcc92ade7012156cba8df
https://pubmed.ncbi.nlm.nih.gov/33231677
https://pubmed.ncbi.nlm.nih.gov/33231677
Autor:
Ruslan N. Sharipov, Ivan S. Yevshi, Fedor Kolpakov, Yury V. Kondrakhin, Anna S. Ryabova, Semyon K. Kolmykov
Publikováno v:
2020 Cognitive Sciences, Genomics and Bioinformatics (CSGB).
Understanding the basic mechanisms of transcription regulation is a major challenge in modern biology. Regulation of transcription is a complex process in which transcription factors (TFs) play a key role. Chromatin immunoprecipitation followed by hi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::82c978a2753be5b5f96e7c302ec250c7
https://doi.org/10.1109/csgb51356.2020.9214614
https://doi.org/10.1109/csgb51356.2020.9214614
Autor:
Ruslan N. Sharipov, Yury V. Kondrakhin, Semyon K. Kolmykov, Fedor A. Kolpakov, Ivan S. Yevshin
Publikováno v:
Nucleic Acids Research
The current version of the Gene Transcription Regulation Database (GTRD; http://gtrd.biouml.org) contains information about: (i) transcription factor binding sites (TFBSs) and transcription coactivators identified by ChIP-seq experiments for Homo sap
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cad936b441fa9e18eb54eff9e89dab13
https://doi.org/10.1093/nar/gky1128
https://doi.org/10.1093/nar/gky1128
Publikováno v:
PLoS ONE
PLoS ONE, Vol 15, Iss 12, p e0243332 (2020)
PLoS ONE, Vol 15, Iss 12, p e0243332 (2020)
Creating a complete picture of the regulation of transcription seems to be an urgent task of modern biology. Regulation of transcription is a complex process carried out by transcription factors (TFs) and auxiliary proteins. Over the past decade, ChI
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4640c65dbc2d019a661c0ed5020b803d
https://doi.org/10.1371/journal.pone.0243332
https://doi.org/10.1371/journal.pone.0243332
Publikováno v:
Journal of bioinformatics and computational biology. 16(2)
RNA plays an important role in the intracellular cell life and in the organism in general. Besides the well-established protein coding RNAs (messenger RNAs, mRNAs), long non-coding RNAs (lncRNAs) have gained the attention of recent researchers. Altho
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::95f3e27ffff8413f1055f3d58763b169
https://pubmed.ncbi.nlm.nih.gov/29739305
https://pubmed.ncbi.nlm.nih.gov/29739305
Publikováno v:
Journal of bioinformatics and computational biology. 14(2)
Ribosome profiling technology (Ribo-Seq) allowed to highlight more details of mRNA translation in cell and get additional information on importance of mRNA sequence features for this process. Application of translation inhibitors like harringtonine a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c2fc75dbc43c1a06694be6d0bd8b2bd4
https://pubmed.ncbi.nlm.nih.gov/27122318
https://pubmed.ncbi.nlm.nih.gov/27122318
Publikováno v:
Bioinformatics. 11:39-44
A new version of the program PROANAL is described. A multiple linear regression analysis of the protein structure--activity relationship allows one to investigate the combinations of protein sites and factors influencing the activity. The program als
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a881933c90604784d23b18a2f31f2fdd
https://doi.org/10.1093/bioinformatics/11.1.39
https://doi.org/10.1093/bioinformatics/11.1.39