Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Yuliya V Kordonskaya"'
Autor:
Yuliya V. Kordonskaya, Vladimir I. Timofeev, Yulia A. Dyakova, Margarita A. Marchenkova, Yury V. Pisarevsky, Svetlana Yu. Silvestrova, Mikhail V. Kovalchuk
Publikováno v:
Crystals, Vol 12, Iss 11, p 1645 (2022)
It is known that protein dimers form in a solution before proteinase K crystallization. Simulations of the dimer, i.e., a precursor cluster of the proteinase K crystal, at different temperatures, show that molecular dynamics methods make it possible
Externí odkaz:
https://doaj.org/article/80b67a187b9347eb979ecb1a1ae7f3ec
Autor:
Margarita A. Marchenkova, Petr V. Konarev, Yuliya V. Kordonskaya, Kseniia B. Ilina, Yury V. Pisarevsky, Alexander V. Soldatov, Vladimir I. Timofeev, Mikhail V. Kovalchuk
Publikováno v:
Crystals, Vol 12, Iss 6, p 751 (2022)
As is known from molecular dynamics simulation, lysozyme oligomers in crystallization solutions are most stable when taking into account as many precipitant ions as possible embedded in the corresponding crystal structure. Therefore, the number of pr
Externí odkaz:
https://doaj.org/article/726002c5462c4e8e9b5cf408b8872745
Publikováno v:
Crystals, Vol 12, Iss 4, p 484 (2022)
It is known that precursor clusters appear in solution prior to protein crystallization. For proteinase K, as it was found by SAXS, such clusters are dimers, but the accuracy of the method did not allow for determining its type. In this work, the beh
Externí odkaz:
https://doaj.org/article/3190063cd9d24b0292e5603ff48e9f90
Autor:
Yuliya V. Kordonskaya, Vladimir I. Timofeev, Yulia A. Dyakova, Margarita A. Marchenkova, Yury V. Pisarevsky, Mikhail V. Kovalchuk
Publikováno v:
Crystals, Vol 11, Iss 12, p 1534 (2021)
At the moment, the main opinion is that protein crystallization depends mainly on the the precipitant anions, therefore, there have been only few works devoted to the problem of the influence of its cations. Using the molecular dynamics method, we in
Externí odkaz:
https://doaj.org/article/97f6271761434d2a95f8e312623451db
Autor:
Yuliya V. Kordonskaya, Vladimir I. Timofeev, Yulia A. Dyakova, Margarita A. Marchenkova, Yury V. Pisarevsky, Svetlana Yu. Silvestrova, Mikhail V. Kovalchuk
Publikováno v:
Mendeleev Communications. 33:225-227
Autor:
Yuliya V. Kordonskaya, Vladimir I. Timofeev, Yulia A. Dyakova, Margarita A. Marchenkova, Yury V. Pisarevsky, Mikhail V. Kovalchuk
Publikováno v:
Crystals, Vol 11, Iss 9, p 1121 (2021)
We use the MM/GBSA method to calculate the free energies of dimer formation by binding two monomers with different combinations of precipitant ions, both embedded in the structure of monomers and in the crystallization solution. It shows that the lar
Externí odkaz:
https://doaj.org/article/d02f2e3e8f6a40888f34c6b3e91943af
Autor:
Vladimir I. Timofeev, Yulia A. Dyakova, Yuliya V Kordonskaya, Yurii V. Pisarevsky, Michael V Kovalchuk, M. A. Marchenkova
Publikováno v:
Journal of Biomolecular Structure and Dynamics. 39:7223-7230
The protein ability to self-organize plays an important role during the processes occurring in the body (Garcia‐Seisdedos et al., 2019). Protein oligomers are more common in nature than monomers th...
Autor:
Mikhail V. Kovalchuk, Yulia A. Dyakova, Vladimir I. Timofeev, M. A. Marchenkova, Yuliya V. Kordonskaya, Yury Pisarevsky
Publikováno v:
Crystals
Volume 11
Issue 9
Crystals, Vol 11, Iss 1121, p 1121 (2021)
Volume 11
Issue 9
Crystals, Vol 11, Iss 1121, p 1121 (2021)
We use the MM/GBSA method to calculate the free energies of dimer formation by binding two monomers with different combinations of precipitant ions, both embedded in the structure of monomers and in the crystallization solution. It shows that the lar