Proteome-wide prediction of bacterial carbohydrate-binding proteins as a tool for understanding commensal and pathogen colonisation of the vaginal microbiome

Autor: François Bonnardel, Stuart M. Haslam, Anne Dell, Ten Feizi, Yan Liu, Virginia Tajadura-Ortega, Yukie Akune, Lynne Sykes, Phillip R. Bennett, David A. MacIntyre, Frédérique Lisacek, Anne Imberty

Publikováno v: npj Biofilms and Microbiomes, Vol 7, Iss 1, Pp 1-10 (2021)

Abstract Bacteria use carbohydrate-binding proteins (CBPs), such as lectins and carbohydrate-binding modules (CBMs), to anchor to specific sugars on host surfaces. CBPs in the gut microbiome are well studied, but their roles in the vagina microbiome

Externí odkaz: https://doaj.org/article/10f92abe1aad492aa4fdca310a4ddfcd

Proteome-wide prediction of bacterial carbohydrate-binding proteins as a tool for understanding commensal and pathogen colonisation of the vaginal microbiome

Autor: Ten Feizi, Stuart M. Haslam, Frédérique Lisacek, Anne Dell, François Bonnardel, Phillip R. Bennett, Yan Liu, Anne Imberty, Virginia Tajadura-Ortega, Yukie Akune, David A. MacIntyre, Lynne Sykes

Publikováno v: npj Biofilms and Microbiomes, Vol 7, Iss 1, Pp 1-10 (2021)
NPJ Biofilms and Microbiomes
npj Biofilms and Microbiomes
npj Biofilms and Microbiomes, [London?]: Springer Nature published in partnership with Nanyang Technological University, 2021, 7 (1), ⟨10.1038/s41522-021-00220-9⟩

Bacteria use carbohydrate-binding proteins (CBPs), such as lectins and carbohydrate-binding modules (CBMs), to anchor to specific sugars on host surfaces. CBPs in the gut microbiome are well studied, but their roles in the vagina microbiome and invol

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6844eb9e5bc83cbcff18a315a1e0726f
https://doaj.org/article/10f92abe1aad492aa4fdca310a4ddfcd

Development and application of an algorithm to compute weighted multiple glycan alignments

Autor: Kiyoko F. Aoki-Kinoshita, Masae Hosoda, Yukie Akune

Publikováno v: Bioinformatics

Motivation A glycan consists of monosaccharides linked by glycosidic bonds, has branches and forms complex molecular structures. Databases have been developed to store large amounts of glycan-binding experiments, including glycan arrays with glycan-b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8b8302e0298987e89bd5908fe051c7e5
http://europepmc.org/articles/PMC5408794

Trends and Future Perspectives for Glycoinformatics

Autor: Masae Hosoda, Kiyoko F. Aoki-Kinoshita, Yukie Akune, Akihiro Fujita, Shinichiro Tsuchiya

Publikováno v: Trends in Glycoscience and Glycotechnology. 26:89-97

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::f272bb0d729717c66a0933354aad13d6
https://doi.org/10.4052/tigg.26.89

Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database

Autor: Jodie L. Abrahams, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Jingyu Zhang, Matthew Campbell, Chi-Hung Lin, Nicolle H. Packer

Publikováno v: Carbohydrate research. 431

Glycan structures attached to proteins are comprised of diverse monosaccharide sequences and linkages that are produced from precursor nucleotide-sugars by a series of glycosyltransferases. Databases of these structures are an essential resource for

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::da90343188ad9cddde2b9771835fce2c
https://pubmed.ncbi.nlm.nih.gov/27318307