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The Chronus Quantum software package

Autor: Williams-Young, DB, Petrone, A, Sun, S, Stetina, TF, Lestrange, P, Hoyer, CE, Nascimento, DR, Koulias, L, Wildman, A, Kasper, J, Goings, JJ, Ding, F, DePrince, AE, Valeev, EF, Li, X

Publikováno v: Wiley Interdisciplinary Reviews Computational Molecular Science, vol 10, iss 2
Wiley Interdisciplinary Reviews: Computational Molecular Science, vol 10, iss 2

The Chronus Quantum (ChronusQ) software package is an open source (under the GNU General Public License v2) software infrastructure which targets the solution of challenging problems that arise in ab initio electronic structure theory. Special emphas

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::02eb20adaaf08124a5fe8b0deb7d88bb
https://escholarship.org/uc/item/36f1p562

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Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex

Autor: Chiner-Oms Á, Berney M, Boinett C, González-Candelas F, Young DB, Gagneux S, Jacobs WR, Parkhill J, Cortes T, Comas I

Publikováno v: NATURE COMMUNICATIONS
r-FISABIO. Repositorio Institucional de Producción Científica
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r-FISABIO: Repositorio Institucional de Producción Científica
Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO)

The Mycobacterium tuberculosis complex (MTBC) members display different host-specificities and virulence phenotypes. Here, we have performed a comprehensive RNAseq and methylome analysis of the main clades of the MTBC and discovered unique transcript

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::047b2e8bad46323c88e0839698223bd4
https://fundanet.fisabio.san.gva.es/publicaciones/ProdCientif/PublicacionFrw.aspx?id=3884

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[18F]-FDG PET/CT characterisation of progressive HIV-associated tuberculosis

Autor: Wilkinson, RJ, Esmail, H, Lesosky, M, Lai, RP, Wilkinson, KA, Graham, CM, Coussens, AK, Oni, T, Warwick, J, Said-Hartley, Q, Koegenelburg, CF, Walzl, G, Flynn, JL, Young, DB, Barry, CE, O'Garra, A

Tuberculosis is classically divided into states of latent infection and active disease. Using combined positron emission and computed tomography in 35 asymptomatic, antiretroviral therapy naïve, HIV-1 infected adults with latent tuberculosis, we ide

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1032::ef7362b954a384080621bf7e8f181215
http://hdl.handle.net/10044/1/37409

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Structural characterization of CYP144A1 - a cytochrome P450 enzyme expressed from alternative transcripts in Mycobacterium tuberculosis

Autor: Chenge, J, Kavanagh, ME, Driscoll, MD, McLean, KJ, Young, DB, Cortes, T, Matak-Vinkovic, D, Levy, CW, Rigby, SEJ, Leys, D, Abell, C, Munro, AW

Publikováno v: Chenge, J, Kavanagh, M E, Driscoll, M, Mclean, K, Young, D B, Cortes, T, Matak-Vinkovic, D, Levy, C, Rigby, S, Leys, D, Abell, C & Munro, A 2016, ' Structural characterization of CYP144A1 – a cytochrome P450 enzyme expressed from alternative transcripts in Mycobacterium tuberculosis ' Scientific Reports, vol 6, 26628 . DOI: 10.1038/srep26628

Mycobacterium tuberculosis (Mtb) causes the disease tuberculosis (TB). The virulent Mtb H37Rv strain encodes 20 cytochrome P450 (CYP) enzymes, many of which are implicated in Mtb survival and pathogenicity in the human host. Bioinformatics analysis r

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::5f0631418849d29872cd964829124e24
https://researchonline.lshtm.ac.uk/id/eprint/2550068/1/srep26628.PMC4880925.pdf

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Effect of isoniazid on antigen-specific interferon-gamma secretion in latent tuberculosis

Autor: Torres, M, Garcia-Garcia, L, Cruz-Hervert, P, Guio, H, Carranza, C, Ferreyra-Reyes, L, Canizales, S, Molina, S, Ferreira-Guerrero, E, Tellez, N, Montero-Campos, R, Delgado-Sanchez, G, Mongua-Rodriguez, N, Sifuentes-Osornio, J, Ponce-de Leon, A, Sada, E, Young, DB, Wilkinson, RJ

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1032::f8f73c5721632d87f06c7ef1f61dc16a
http://hdl.handle.net/10044/1/21632

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Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis

Autor: Cortes T, Schubert OT, Rose G, Arnvig KB, Comas I, Aebersold R, Young DB

Publikováno v: CELL REPORTS
r-FISABIO: Repositorio Institucional de Producción Científica
Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO)
r-FISABIO. Repositorio Institucional de Producción Científica
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Deciphering physiological changes that mediate transition of Mycobacterium tuberculosis between replicating and nonreplicating states is essential to understanding how the pathogen can persist in an individual host for decades. We have combined RNA s

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::4860443becb1949f45561edd9c9dc9cb
https://fundanet.fisabio.san.gva.es/publicaciones/ProdCientif/PublicacionFrw.aspx?id=5331

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