Zobrazeno 1 - 10
of 35
pro vyhledávání: '"Yoo-Bok Cho"'
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-11 (2017)
Zinc homeostasis in most bacteria is achieved by a set of regulators, each responding to a certain level of intracellular zinc. Here the authors show that, inStreptomyces coelicolor, the Zur regulator modulates the expression of genes for zinc import
Externí odkaz:
https://doaj.org/article/b7f2853435af455889a328e857207e08
Autor:
Mi-Hyun Park, Hwanseok Rhee, Jung Hoon Park, Hae-Mi Woo, Byung-Ok Choi, Bo-Young Kim, Ki Wha Chung, Yoo-Bok Cho, Hyung Jin Kim, Ji-Won Jung, Soo Kyung Koo
Publikováno v:
PLoS ONE, Vol 9, Iss 1, p e86664 (2014)
Next-generation sequencing (NGS) has enabled the high-throughput discovery of germline and somatic mutations. However, NGS-based variant detection is still prone to errors, resulting in inaccurate variant calls. Here, we categorized the variants dete
Externí odkaz:
https://doaj.org/article/ac41c115f415446b8b7bf29325006a43
Autor:
Yoo-Bok Cho1, Eun Ju Lee1, Suhyung Cho1, Tae Yong Kim2, Jin Hwan Park2, Byung-Kwan Cho1,3 bcho@kaist.ac.kr
Publikováno v:
BMC Genomics. 2/29/2016, Vol. 17, p1-12. 12p. 1 Diagram, 4 Graphs.
Publikováno v:
Proteins: Structure, Function, and Bioinformatics. 81:1644-1652
Certain bacterial zinc-containing anti-sigma (ZAS) factors respond sensitively to thiol-induced oxidative stress by undergoing conformational changes, which in turn reduce binding affinities for their cognate sigma factors. This redox sensitivity pro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6123446d144ee86566bf31f8002abf9b
https://doi.org/10.1002/prot.24323
https://doi.org/10.1002/prot.24323
Average read profile of each RNA classes. Solid line indicates forward strand while dotted line indicates reverse (antisense of the forward) strand. TIS indicates transcription initiation site and TTS indicates transcription termination site. (DOC 70
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d9b9bb5922e427b93666d79d34c45419
Significantly enriched KEGG pathways of genes with lancRNAs in S. cerevisiae. Significantly enriched KEGG pathways of genes with lancRNA which covers more than half of coding region at ME (mid exponential), ES (early stationary), and HS (heat shock)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4713da918595cd9f282aae5368cbe71a
Differential expression of transfrags. (A) Differential expression pattern of mRNA/lancRNA pairs. (B) Differential expression pattern of mRNA/sancRNA pairs. (DOC 144 kb)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b5222f3c943c889095c378783a3c6658
Determination of optimal cutoff value to differentiate non-coding transfrags from coding ones. The optimal cutoff value was determined by R script within the CPAT package with appropriate modification to fit our circumstance. (DOC 37 kb)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b00f6bfee1d237f485b1fd57ffd696fe
Autor:
Yoo Bok Cho, Min-Sik Kim, Timothy J. Donohue, Jung-Hye Roe, Hae Min Kim, Ji Sun Yoo, Yann S. Dufour, Kang Lok Lee, Gi Baeg Nam, Joo-Hong Park
Publikováno v:
Molecular Microbiology. 85:326-344
Summary Numerous thiol-reactive compounds cause oxidative stress where cells counteract by activation of survival strategies regulated by thiol-based sensors. In Streptomyces coelicolor, a model actinomycete, a sigma/antisigma pair SigR/RsrA controls
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5f22e2c9cbd26061809da7b2fe750b4f
https://doi.org/10.1111/j.1365-2958.2012.08115.x
https://doi.org/10.1111/j.1365-2958.2012.08115.x
Publikováno v:
Nucleic Acids Research
Various environmental oxidative stresses are sensed by redox-sensitive regulators through cysteine thiol oxidation or modification. A few zinc-containing anti-sigma (ZAS) factors in actinomycetes have been reported to respond sensitively to thiol oxi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ede54fcb448c6e6648b69c7eb8eb58e6
https://doi.org/10.1093/nar/gkr477
https://doi.org/10.1093/nar/gkr477