A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don.

Autor: Fujino, Takeshi, Yamaguchi, Katsushi, Yokoyama, Toshiyuki T., Hamanaka, Toshiya, Harazono, Yoritaka, Kamada, Hiroaki, Kobayashi, Wataru, Ujino-Ihara, Tokuko, Uchiyama, Kentaro, Matsumoto, Asako, Izuno, Ayako, Tsumura, Yoshihiko, Toyoda, Atsushi, Shigenobu, Shuji, Moriguchi, Yoshinari, Ueno, Saneyoshi, Kasahara, Masahiro

Publikováno v: BMC Genomics; 11/5/2024, Vol. 25 Issue 1, p1-16, 16p

MoMI-G: modular multi-scale integrated genome graph browser.

Autor: Yokoyama, Toshiyuki T.¹ (AUTHOR), Sakamoto, Yoshitaka¹ (AUTHOR), Seki, Masahide¹ (AUTHOR), Suzuki, Yutaka¹ (AUTHOR), Kasahara, Masahiro¹ (AUTHOR) mkasa@k.u-tokyo.ac.jp

Publikováno v: BMC Bioinformatics. 11/5/2019, Vol. 20 Issue 1, p1-14. 14p. 4 Color Photographs, 1 Diagram, 1 Chart.

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A strategy for building and using a human reference pangenome.

Autor: Llamas B; Australian Centre for Ancient DNA, School of Biological Sciences, Environment Institute, The University of Adelaide, Adelaide, South Australia, 5005, Australia., Narzisi G; New York Genome Center, New York, NY, 10013, USA., Schneider V; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA., Audano PA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, 98195, USA., Biederstedt E; Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA., Blauvelt L; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Bradbury P; Robert W. Holley Center, USDA-ARS, Ithaca, NY, 14853, USA., Chang X; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Chin CS; DNAnexus, Mountain View, CA, 94040, USA., Fungtammasan A; DNAnexus, Mountain View, CA, 94040, USA., Clarke WE; New York Genome Center, New York, NY, 10013, USA., Cleary A; National Center for Genome Resources 87505, Santa Fe, NM, 87505, USA., Ebler J; Max Planck Institute for Informatics, Saarbrücken, Germany., Eizenga J; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Sibbesen JA; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Markello CJ; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Garrison E; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Garg S; Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA., Hickey G; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Lazo GR; Western Regional Research Center, USDA-ARS, Albany, CA, 94710-1105, USA., Lin MF; mlin.net LLC, San Jose, CA, 95113, USA., Mahmoud M; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston TX, TX, 77030, USA., Marschall T; Max Planck Institute for Informatics, Saarbrücken, Germany., Minkin I; Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA, 16802, USA., Monlong J; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Musunuri RL; New York Genome Center, New York, NY, 10013, USA., Sagayaradj S; Genome Center, University of California, Davis, Davis, CA, USA.; BASF, West Sacramento, CA, USA., Novak AM; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Rautiainen M; Max Planck Institute for Informatics, Saarbrücken, Germany., Regier A; McDonnell Genome Institute, Washington University in St Louis, St Louis, MO, 63108, USA., Sedlazeck FJ; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston TX, TX, 77030, USA., Siren J; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Souilmi Y; Australian Centre for Ancient DNA, School of Biological Sciences, Environment Institute, The University of Adelaide, Adelaide, South Australia, 5005, Australia., Wagner J; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA., Wrightsman T; Section of Plant Breeding and Genetics, Cornell University, Ithaca, NY, 14853, USA., Yokoyama TT; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan., Zeng Q; Laboratory Corporation of America Holdings, Westborough, MA, 01581, USA., Zook JM; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA., Paten B; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Busby B; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.

Publikováno v: F1000Research [F1000Res] 2019 Oct 14; Vol. 8, pp. 1751. Date of Electronic Publication: 2019 Oct 14 (Print Publication: 2019).