Zobrazeno 1 - 10
of 30
pro vyhledávání: '"Yojiro Ishida"'
Autor:
Fuminori Kato, Yoshihiro Yamaguchi, Keiko Inouye, Koichi Matsuo, Yojiro Ishida, Masayori Inouye
Publikováno v:
The FEBS journalReferences.
Toxin-antitoxin (TA) systems consist of a toxin inhibiting essential cellular functions (such as DNA, RNA and protein synthesis), and its cognate antitoxin neutralizing the toxicity. Recently, we identified a TA system termed TsbA/TsbT in the Staphyl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb0d72ce7fc56b20dd4e7729907350c0
https://pubmed.ncbi.nlm.nih.gov/36148483
https://pubmed.ncbi.nlm.nih.gov/36148483
Autor:
Fuminori Kato, Yoshihiro Yamaguchi, Keiko Inouye, Koichi Matsuo, Yojiro Ishida, Masayori Inouye
Publikováno v:
FEBS Journal; Mar2023, Vol. 290 Issue 6, p1502-1518, 17p
Publikováno v:
Proceedings of the National Academy of Sciences. 117:28572-28575
Among the 20 amino acids, three of them—leucine (Leu), arginine (Arg), and serine (Ser)—are encoded by six different codons. In comparison, all of the other 17 amino acids are encoded by either 4, 3, 2, or 1 codon. Peculiarly, Ser is separated in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b328e0776259c808c09ce64f6cd8fc38
https://doi.org/10.1073/pnas.2014567117
https://doi.org/10.1073/pnas.2014567117
Autor:
Masayori Inouye, Swapna Gurla, Andriy Kryshtafovych, Gaohua Liu, Naohiro Kobayashi, Yojiro Ishida, Beate Bersch, Gaetano T. Montelione, Yutaka Kuroda, Yuanpeng J. Huang, Nan Wu, Ning Zhang, Krzysztof Fidelis, Toshio Yamazaki, Andy LiWang
Publikováno v:
Proteins-Structure, Function and Bioinformatics
Proteins-Structure, Function and Bioinformatics, Wiley, In press, ⟨10.1002/prot.26246⟩
Proteins, vol 89, iss 12
Proteins-Structure, Function and Bioinformatics, In press, ⟨10.1002/prot.26246⟩
Proteins-Structure, Function and Bioinformatics, Wiley, In press, ⟨10.1002/prot.26246⟩
Proteins, vol 89, iss 12
Proteins-Structure, Function and Bioinformatics, In press, ⟨10.1002/prot.26246⟩
NMR studies can provide unique information about protein conformations in solution. In CASP14, three reference structures provided by solution NMR methods were available (T1027, T1029, and T1055), as well as a fourth data set of NMR-derived contacts
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::090ed853abaf8daa5ef12173b5abb054
https://hal.archives-ouvertes.fr/hal-03357450/document
https://hal.archives-ouvertes.fr/hal-03357450/document
Autor:
Casey A. Cole, David A. Snyder, Yuanpeng J. Huang, Gaetano T. Montelione, Antonio Rosato, Andriy Kryshtafovych, Roberto Tejero, Homayoun Valafar, Chris Sander, Davide Sala, Gaohua Liu, G. V. T. Swapna, Krzysztof Fidelis, Yojiro Ishida, Masayori Inouye, Kelly P Brock
Publikováno v:
Proteins
CASP13 has investigated the impact of sparse NMR data on the accuracy of protein structure prediction. NOESY and 15 N-1 H residual dipolar coupling data, typical of that obtained for 15 N,13 C-enriched, perdeuterated proteins up to about 40 kDa, were
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::731766563bace94661b6528bce505991
https://doi.org/10.1002/prot.25837
https://doi.org/10.1002/prot.25837
Publikováno v:
Biochemical and Biophysical Research Communications. 518:533-540
MazF is a sequence-specific endoribonuclease or mRNA interferase, which cleaves RNA at a specific sequence. Since the expression of a specific gene or a group of specific genes can be regulated by MazF, expanding the repertoire of recognition sequenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::76c74813c24f8ec39016b04a22c56a8e
https://doi.org/10.1016/j.bbrc.2019.08.076
https://doi.org/10.1016/j.bbrc.2019.08.076
Autor:
Foldit Players, Gaetano T. Montelione, Matthew J. Bick, Jeff Flatten, Aaron Bauer, Brian Koepnick, Roger D. Estep, David Baker, Tamir Husain, Zoran Popović, Susan Kleinfelter, Linda Wei, Alex Ford, Toke Nørgård-Solano, Seth Cooper, Firas Khatib, Alexander Boykov, Yojiro Ishida, Gaohua Liu, Frank DiMaio, Daniel-Adriano Silva
Publikováno v:
Nature
Online citizen science projects such as GalaxyZoo1, Eyewire2 and Phylo3 have proven very successful for data collection, annotation and processing, but for the most part have harnessed human pattern-recognition skills rather than human creativity. An
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0d935a9b9943c14bb761352567920b5e
https://doi.org/10.1038/s41586-019-1274-4
https://doi.org/10.1038/s41586-019-1274-4
Autor:
Hansol Chung, Anjali Mone, Thomas A Judge, Charalampos Papachristou, Sanket Patel, Imad Awan, Harpreet Singh, Joshua DeSipio, Sangita Phadtare, Robert Cooper, Yojiro Ishida, Zoya Grigoryan
Publikováno v:
HelicobacterREFERENCES. 26(1)
Background Regional variation in Helicobacter pylori resistance patterns is a significant contributing factor for the ineffectiveness of traditional treatments. To improve treatment outcomes, we sought to create an individualized, susceptibility-driv
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bc8dcc14a17ac08fcf3878a87bbf50e2
https://pubmed.ncbi.nlm.nih.gov/33167084
https://pubmed.ncbi.nlm.nih.gov/33167084
Publikováno v:
Methods in enzymology. 614
Selective methyl labeling is an extremely powerful approach to study the structure, dynamics, and explore mechanistic insights of large biomolecules by solution NMR. Methyls are relatively insensitive to chemical exchange-induced depolarization and p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::8966a69ec58845b51ef7f3b423933f46
https://pubmed.ncbi.nlm.nih.gov/30611422
https://pubmed.ncbi.nlm.nih.gov/30611422