Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Yohan Jarosz"'
Autor:
Anna Niarakis, Marek Ostaszewski, Alexander Mazein, Inna Kuperstein, Martina Kutmon, Marc E. Gillespie, Akira Funahashi, Marcio Luis Acencio, Ahmed Hemedan, Michael Aichem, Karsten Klein, Tobias Czauderna, Felicia Burtscher, Takahiro G. Yamada, Yusuke Hiki, Noriko F. Hiroi, Finterly Hu, Nhung Pham, Friederike Ehrhart, Egon L. Willighagen, Alberto Valdeolivas, Aurelien Dugourd, Francesco Messina, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Sylvain Soliman, Sara Sadat Aghamiri, Bhanwar Lal Puniya, Aurélien Naldi, Tomáš Helikar, Vidisha Singh, Marco Fariñas Fernández, Viviam Bermudez, Eirini Tsirvouli, Arnau Montagud, Vincent Noël, Miguel Ponce-de-Leon, Dieter Maier, Angela Bauch, Benjamin M. Gyori, John A. Bachman, Augustin Luna, Janet Piñero, Laura I. Furlong, Irina Balaur, Adrien Rougny, Yohan Jarosz, Rupert W. Overall, Robert Phair, Livia Perfetto, Lisa Matthews, Devasahayam Arokia Balaya Rex, Marija Orlic-Milacic, Luis Cristobal Monraz Gomez, Bertrand De Meulder, Jean Marie Ravel, Bijay Jassal, Venkata Satagopam, Guanming Wu, Martin Golebiewski, Piotr Gawron, Laurence Calzone, Jacques S. Beckmann, Chris T. Evelo, Peter D’Eustachio, Falk Schreiber, Julio Saez-Rodriguez, Joaquin Dopazo, Martin Kuiper, Alfonso Valencia, Olaf Wolkenhauer, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID-19 Disease Map Community
Publikováno v:
Frontiers in Immunology, Vol 14 (2024)
IntroductionThe COVID-19 Disease Map project is a large-scale community effort uniting 277 scientists from 130 Institutions around the globe. We use high-quality, mechanistic content describing SARS-CoV-2-host interactions and develop interoperable b
Externí odkaz:
https://doaj.org/article/ac53015acf3143cf9c3f232ae67ad161
Autor:
Fabrice P A David, Julien Delafontaine, Solenne Carat, Frederick J Ross, Gregory Lefebvre, Yohan Jarosz, Lucas Sinclair, Daan Noordermeer, Jacques Rougemont, Marion Leleu
Publikováno v:
PLoS ONE, Vol 9, Iss 1, p e85879 (2014)
The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibi
Externí odkaz:
https://doaj.org/article/cd966563ea37422396601dabde242249
Autor:
Julien Roux, Sara S. Fonseca Costa, Philippe Moret, Julien Wollbrett, Sébastien Moretti, Frederic B. Bastian, Anne Niknejad, Komal Sanjeev, Valentine Rech de Laval, Yohan Jarosz, Marc Robinson-Rechavi, Amina Echchiki, Mar Gonzales-Porta, Angelique Escoriza, Emilie Person, Balazs Laurenczy, Aurélie Comte, Marta Rosikiewicz, Gilles Parmentier, Walid H. Gharib, Mathieu Seppey, Tarcisio Mendes de Farias, Patrick Roelli
Publikováno v:
Nucleic acids research, vol. 49, no. D1, pp. D831-D847
Nucleic Acids Research
Nucleic Acids Research
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). It is based exclusively on curated healthy wild-ty
Autor:
Tatyana Goldberg, K. Schuetze, Gert Vriend, Haim Ashkenazy, T. Karl, Nir Ben-Tal, Yohan Jarosz, Michael Heinzinger, Seán I. O'Donoghue, Chris Sander, Guy Yachdav, Martin Steinegger, Laszlo Kajan, Michael Bernhofer, Tobias Olenyi, Yana Bromberg, Piotr Gawron, Avner Schlessinger, Burkhard Rost, Christian Dallago, Milot Mirdita, Andrea Schafferhans, Wei Gu, Christophe Trefois, Reinhard Schneider, Jiajun Qiu, Venkata P. Satagopam, Maria Littmann
Since 1992 PredictProtein (https://predictprotein.org) is a one-stop online resource for protein sequence analysis with its main site hosted at the Luxembourg Centre for Systems Biomedicine (LCSB) and queried monthly by over 3,000 users in 2020. Pred
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9ccc5c29f01b37fcc972b2c1036a568b
https://doi.org/10.1101/2021.02.23.432527
https://doi.org/10.1101/2021.02.23.432527
Autor:
Regina Becker, Venkata P. Satagopam, Valentin Grouès, Christophe Trefois, Pinar Alper, Jacek Lebioda, Yohan Jarosz
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783319983783
IPAW
IPAW
Within life-science research the upcoming EU General Data Protection Regulation has a significant operational impact on organisations that use and exchange controlled-access Human Data. One implication of the GDPR is data bookkeeping. In this poster
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f5d40169d09ed408ff72b26b25a5a314
https://doi.org/10.1007/978-3-319-98379-0_33
https://doi.org/10.1007/978-3-319-98379-0_33
Autor:
Anne Kaysen, Patrick May, Shaman Narayanasamy, Anna Heintz-Buschart, Paul Wilmes, Cedric Christian Laczny, Yohan Jarosz, Nicolás Pinel, Malte Herold, Emilie E. L. Muller
Publikováno v:
Genome Biology
Genome Biology, BioMed Central, 2016, 17 (1), ⟨10.1186/s13059-016-1116-8⟩
GENOME BIOLOGY
Repositorio EAFIT
Universidad EAFIT
instacron:Universidad EAFIT
Genome Biology, 17, 260. London, United Kingdom: BioMed Central (2016).
Genome Biology, BioMed Central, 2016, 17 (1), ⟨10.1186/s13059-016-1116-8⟩
GENOME BIOLOGY
Repositorio EAFIT
Universidad EAFIT
instacron:Universidad EAFIT
Genome Biology, 17, 260. London, United Kingdom: BioMed Central (2016).
Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and often result in sub-optimal data usage. Here we present IMP, a reproducible and modular pipeline for the integrated and reference-independent analysis of coupl
Autor:
Nicolás Pinel, Paul Wilmes, Anna Heintz-Buschart, Shaman Narayanasamy, Yohan Jarosz, Patrick May, Cedric Christian Laczny, Emilie E. L. Muller, Anne Kaysen, Malte Herold
We present IMP, an automated pipeline for reproducible integrated analyses of coupled metagenomic and metatranscriptomic data. IMP incorporates preprocessing, iterative co-assembly of metagenomic and metatranscriptomic data, analyses of microbial com
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bbdf74fcf444e46235baeb6729c396f2
https://doi.org/10.1101/039263
https://doi.org/10.1101/039263
Autor:
Shaman Narayanasamy, Yohan Jarosz, Muller, Emilie, Heintz-Buschart, Anna, Herold, Malte, Kaysen, Anne, Laczny, Cédric, Pinel, Nicolás, May, Patrick, Wilmes, Paul
Supplementary figures and notes. Figures S1–S3 and Notes S1–S2. Detailed figure legends available within file. (PDF 1047 kb)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8c8b5744c875509b37370f730de43488
Autor:
Mauro Delorenzi, Irina Krier, Teemu Andersin, Li Long, Nicolas Guex, Arnaud Fortier, David Bernasconi, Marion Leleu, Guillaume Rey, Julia Cajan, Fabrice P. A. David, Winship Herr, Fabienne Lammers, Sunil K. Raghav, Olivier Martin, Jacques Rougemont, Aurélien Naldi, Roberto Fabbretti, Eugenia Migliavacca, Pascal Gos, Viviane Praz, Robin Liechti, Ueli Schibler, Gwendal LeMartelot, Nouria Hernandez, Laura Symul, Pascal Cousin, Frederick J. Ross, Yohan Jarosz, Béatrice Desvergne, Donatella Canella, Nacho Molina, Ioannis Xenarios, Felix Naef, Lucas Sinclair, Volker Vlegel, Federica Gilardi, Gwendal Le Martelot, Bart Deplancke, Dmitry Kuznetsov
Publikováno v:
Genome Research, vol. 22, no. 4, pp. 666-680
The genomic loci occupied by RNA polymerase (RNAP) III have been characterized in human culture cells by genome-wide chromatin immunoprecipitations, followed by deep sequencing (ChIP-seq). These studies have shown that only ∼40% of the annotated 62
HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
Autor:
Daan Noordermeer, Lucas Sinclair, Marion Leleu, Julien Delafontaine, Frederick J. Ross, Fabrice P. A. David, Yohan Jarosz, Jacques Rougemont, Gregory Lefebvre, Solenne Carat
Publikováno v:
PLoS ONE
PLoS ONE, Vol 9, Iss 1, p e85879 (2014)
PLoS ONE, Vol 9, Iss 1, p e85879 (2014)
The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibi