Zobrazeno 1 - 10
of 605
pro vyhledávání: '"Yli-Harja Olli"'
Identification of feasible pathway information for c-di-GMP binding proteins in cellulose production
Publikováno v:
EMBEC & NBC 2017. EMBEC NBC 2017 2017. IFMBE Proceedings, vol 65. Springer, Singapore
In this paper, we utilize a machine learning approach to identify the significant pathways for c-di-GMP signaling proteins. The dataset involves gene counts from 12 pathways and 5 essential c-di-GMP binding domains for 1024 bacterial genomes. Two nov
Externí odkaz:
http://arxiv.org/abs/2204.12526
Autor:
Farea, Amer1,2 (AUTHOR), Yli-Harja, Olli1,3 (AUTHOR), Emmert-Streib, Frank1 (AUTHOR) frank.emmert-streib@tuni.fi
Publikováno v:
AI. Sep2024, Vol. 5 Issue 3, p1534-1557. 24p.
The field artificial intelligence (AI) has been founded over 65 years ago. Starting with great hopes and ambitious goals the field progressed though various stages of popularity and received recently a revival in the form of deep neural networks. Som
Externí odkaz:
http://arxiv.org/abs/2008.05607
We are used to the availability of big data generated in nearly all fields of science as a consequence of technological progress. However, the analysis of such data possess vast challenges. One of these relates to the explainability of artificial int
Externí odkaz:
http://arxiv.org/abs/2001.09464
Autor:
Orntoft Torben, Lamy Philippe, Andersen Claus L, Oster Bodil, Laurila Kirsti, Yli-Harja Olli, Wiuf Carsten
Publikováno v:
BMC Bioinformatics, Vol 12, Iss 1, p 215 (2011)
Abstract Background Patterns of genome-wide methylation vary between tissue types. For example, cancer tissue shows markedly different patterns from those of normal tissue. In this paper we propose a beta-mixture model to describe genome-wide methyla
Externí odkaz:
https://doaj.org/article/df55ebe811c049d3a1e91cb5e56b003b
Publikováno v:
BMC Bioinformatics, Vol 12, Iss 1, p 121 (2011)
Abstract Background In prokaryotes, transcription and translation are dynamically coupled, as the latter starts before the former is complete. Also, from one transcript, several translation events occur in parallel. To study how events in transcripti
Externí odkaz:
https://doaj.org/article/ba61265ed0b94ec0899f93dc679a1b87
Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
Autor:
Dudley Aimée M, Birbaumer Mirko, Selinummi Jyrki, Garmendia-Torres Cecilia, Chowdhury Sharif, Äijö Tarmo, Ruusuvuori Pekka, Pelkmans Lucas, Yli-Harja Olli
Publikováno v:
BMC Bioinformatics, Vol 11, Iss 1, p 248 (2010)
Abstract Background Several algorithms have been proposed for detecting fluorescently labeled subcellular objects in microscope images. Many of these algorithms have been designed for specific tasks and validated with limited image data. But despite
Externí odkaz:
https://doaj.org/article/e876269e5ced4e1a85b672727405eef9
Publikováno v:
EURASIP Journal on Advances in Signal Processing, Vol 2010, Iss 1, p 235795 (2010)
Background. Revealing protein-DNA interactions is a key problem in understanding transcriptional regulation at mechanistic level. Computational methods have an important role in predicting transcription factor target gene genomewide. Multiple data fu
Externí odkaz:
https://doaj.org/article/364312268fe24218978b35b0378bc96b
Publikováno v:
BMC Bioinformatics, Vol 10, Iss 1, p 165 (2009)
Abstract Background Cluster analysis has become a standard computational method for gene function discovery as well as for more general explanatory data analysis. A number of different approaches have been proposed for that purpose, out of which diff
Externí odkaz:
https://doaj.org/article/72a9c740cb3b4ea9a62cba2eac619420
Publikováno v:
BMC Bioinformatics, Vol 8, Iss 1, p 233 (2007)
Abstract Background In practice many biological time series measurements, including gene microarrays, are conducted at time points that seem to be interesting in the biologist's opinion and not necessarily at fixed time intervals. In many circumstanc
Externí odkaz:
https://doaj.org/article/cd2f05dbe5fd46b3a534d7304fe9476f