Zobrazeno 1 - 10
of 28
pro vyhledávání: '"Yinlong Xie"'
Autor:
Zhichao Li, Yinlong Xie, Wenjun Zeng, Yushan Huang, Shengchang Gu, Ya Gao, Weihua Huang, Lihua Lu, Xiaohong Wang, Jiasheng Wu, Xiaoxu Yin, Rongyi Zhu, Guodong Huang, Lin Lu, Jingbo Tang, Yunping Zheng, Quan Liu, Xianqiang Zhou, Riqiang Shan, Bo Wang, Mingyan Fang, Xin Jin
Publikováno v:
Clinical and Translational Discovery, Vol 3, Iss 6, Pp n/a-n/a (2023)
Abstract Background With the advancement of whole‐genome sequencing (WGS) technology, massively parallel sequencing (MPS) remains the mainstream due to its accuracy, low cost, and high throughput. The development of the analytical pipeline correspo
Externí odkaz:
https://doaj.org/article/7f74bd352af8483eba796e80084b1757
Autor:
Jiancong Weng, Tian Chen, Yinlong Xie, Xun Xu, Gengyun Zhang, Brock A. Peters, Radoje Drmanac
Publikováno v:
PeerJ, Vol 8, p e8431 (2020)
Recent advances in long fragment read (LFR, also known as linked-read technologies or read-cloud) technologies, such as single tube long fragment reads (stLFR), 10X Genomics Chromium reads, and TruSeq synthetic long-reads, have enabled efficient hapl
Externí odkaz:
https://doaj.org/article/f913012e8ac54940ab616d0be17149df
Autor:
Gengyun Zhang, Brock A. Peters, Xun Xu, Jiancong Weng, Yinlong Xie, Radoje Drmanac, Tian Chen
Publikováno v:
PeerJ, Vol 8, p e8431 (2020)
PeerJ
PeerJ
Recent advances in long fragment read (LFR, also known as linked-read technologies or read-cloud) technologies, such as single tube long fragment reads (stLFR), 10X Genomics Chromium reads, and TruSeq synthetic long-reads, have enabled efficient hapl
Autor:
Wenwei Zhang, Nina Barua, Ao Chen, Zilan Mi, Snezana Drmanac, Fang Chen, Hui Jiang, Andrei Alexeev, Yang Xi, Luo Yinling, Xia Zhao, Radoje Drmanac, Hanjie Shen, Jing Zhao, Xiaojue Wang, Qiaoling Li, Tam Berntsen, Zhanqing Li, Lin Wang, Xun Xu, Yinlong Xie, Xinming Liang, Sijie Dai, Wenlan Tian, Chongjun Xu, Feng Mu, Shiming Shi, Yuan Jiang, Jiguang Li, Meihua Gong, Han Ren, Zhe Lin, Pengjuan Liu
BackgroundSystematic errors can be introduced from DNA amplification during massively parallel sequencing (MPS) library preparation and sequencing array formation. Polymerase chain reaction (PCR)-free genomic library preparation methods were previous
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8ffc03363ccabfd76a46d37710bfc1b3
https://doi.org/10.1101/2019.12.20.885517
https://doi.org/10.1101/2019.12.20.885517
Autor:
Xiao Liu, Rebecca Yu Zhang, Yan Zou, Chongjun Xu, Nina Barua, Ou Wang, Han K. Lam, Xun Xu, Jingbo Tang, Yujun Zhou, Jing Wang, Yinlong Xie, Xiaofang Cheng, Brock A. Peters, Wenlan Tian, Jingwan Wang, Fei Fan, Dan Chen, Jia Sophie Liu, Ao Chen, Snezana Drmanac, Andrei Alexeev, Yuhui Sun, Linying Wang, Radoje Drmanac, Ellis Anderson, Xiaojuan Qi, Dong Yuliang, Wenwei Zhang, M. Wu, Robert Chin, Huanming Yang, Qing Mao, Christian Villarosa, Karsten Kristiansen, Staci Nguyen, Scott Gablenz, He Wang, Darlene Nguyen
Publikováno v:
Wang, O, Chin, R, Cheng, X, Wu, M K Y, Mao, Q, Tang, J, Sun, Y, Anderson, E, Lam, H K, Chen, D, Zhou, Y, Wang, L, Fan, F, Zou, Y, Xie, Y, Zhang, R Y, Drmanac, S, Nguyen, D, Xu, C, Villarosa, C, Gablenz, S, Barua, N, Nguyen, S, Tian, W, Liu, J S, Wang, J, Liu, X, Qi, X, Chen, A, Wang, H, Dong, Y, Zhang, W, Alexeev, A, Yang, H, Wang, J, Kristiansen, K, Xu, X, Drmanac, R & Peters, B A 2019, ' Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly ', Genome Research, vol. 29, no. 5, pp. 798-808 . https://doi.org/10.1101/gr.245126.118
Here, we describe single-tube long fragment read (stLFR), a technology that enables sequencing of data from long DNA molecules using economical second-generation sequencing technology. It is based on adding the same barcode sequence to subfragments o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9f6de987fdf799d1cbdb17c1b96eee50
https://curis.ku.dk/portal/da/publications/efficient-and-unique-cobarcoding-of-secondgeneration-sequencing-reads-from-long-dna-molecules-enabling-costeffective-and-accurate-sequencing-haplotyping-and-de-novo-assembly(17bcf649-f5eb-48d0-b4a6-5250b87c3764).html
https://curis.ku.dk/portal/da/publications/efficient-and-unique-cobarcoding-of-secondgeneration-sequencing-reads-from-long-dna-molecules-enabling-costeffective-and-accurate-sequencing-haplotyping-and-de-novo-assembly(17bcf649-f5eb-48d0-b4a6-5250b87c3764).html
Autor:
Ou Wang, Robert Chin, Xiaofang Cheng, Michelle Ka Wu, Qing Mao, Jingbo Tang, Yuhui Sun, Ellis Anderson, Han K. Lam, Dan Chen, Yujun Zhou, Linying Wang, Fei Fan, Yan Zou, Yinlong Xie, Rebecca Yu Zhang, Snezana Drmanac, Darlene Nguyen, Chongjun Xu, Christian Villarosa, Scott Gablenz, Nina Barua, Staci Nguyen, Wenlan Tian, Jia Sophie Liu, Jingwan Wang, Xiao Liu, Xiaojuan Qi, Ao Chen, He Wang, Yuliang Dong, Wenwei Zhang, Andrei Alexeev, Huanming Yang, Jian Wang, Karsten Kristiansen, Xun Xu, Radoje Drmanac, Brock A. Peters
Obtaining accurate sequences from long DNA molecules is very important for genome assembly and other applications. Here we describe single tube long fragment read (stLFR), a technology that enables this a low cost. It is based on adding the same barc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::898d8507337eb7fb1b962e68dac5dc7c
Autor:
Yu Wang, Haodong Huang, Honglong Wu, Lars Bolund, Laurent C. A. M. Tellier, Xiuqing Zhang, Zheng Huang, Hongzhi Cao, Rasmus Nielsen, Xin Tong, Li Yue, Bo Li, Xiao Liu, Siyang Liu, Ruibang Luo, Yuhui Sun, Guangzhu He, Sun Jing, Shujia Huang, Dan Chen, Yingrui Li, Xun Xu, Jian Li, Songgang Li, Weihua Huang, Jun Wang, Qiang Feng, Anders Krogh, Peng Sun, Karsten Kristiansen, Snezana Drmanac, Gane Ka-Shu Wong, Binghang Liu, Radoje Drmanac, Yinlong Xie, Jian Wang, Hailong Yang, Peng Gao, Huanming Yang, Fang Yang, Hancheng Zheng
Publikováno v:
Cao, H, Wu, H, Luo, R, Huang, S, Sun, Y, Tong, X, Xie, Y, Liu, B, Yang, H, Zheng, H, Li, J, Li, B, Wang, Y, Yang, F, Sun, P, Liu, S, Gao, P, Huang, H, Sun, J, Chen, D, He, G, Huang, W, Huang, Z, Li, Y, Tellier, L C A M, Liu, X, Feng, Q, Xu, X, Zhang, X, Bolund, L, Krogh, A, Kristiansen, K, Drmanac, R, Drmanac, S, Nielsen, R, Li, S, Wang, J, Yang, H, Li, Y, Wong, G K-S & Wang, J 2015, ' De novo assembly of a haplotype-resolved human genome ', Nature Biotechnology, vol. 33, no. 6, pp. 617-22 . https://doi.org/10.1038/nbt.3200
The human genome is diploid, and knowledge of the variants on each chromosome is important for the interpretation of genomic information. Here we report the assembly of a haplotype-resolved diploid genome without using a reference genome. Our pipelin
Autor:
Douglas E. Soltis, Michael J. Moore, Ya Yang, Eric J. Carpenter, Samuel F. Brockington, Zhixiang Yan, Li Chen, Rowan F. Sage, Gane Ka-Shu Wong, Stephen A. Smith, Yong Zhang, Matthew N. Nelson, Julian M. Hibberd, Yinlong Xie, Sarah Covshoff
Publikováno v:
Molecular Biology and Evolution
Many phylogenomic studies based on transcriptomes have been limited to "single-copy" genes due to methodological challenges in homology and orthology inferences. Only a relatively small number of studies have explored analyses beyond reconstructing s
Autor:
Dennis W. Stevenson, Yong Zhang, Wangdan Xiong, Guanglin Li, Feng Chen, Sean W. Graham, Tobias G. Köllner, Xinlu Chen, John L. Bowman, Carl J. Rothfels, Barbara Crandall-Stotler, David J. Weston, Li Chen, Jianyu Fu, Fay-Wei Li, Jonathan Gershenzon, Gane Ka-Shu Wong, Qidong Jia, Yinlong Xie, Anders Larsson
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, vol 113, iss 43
ResearcherID
Proceedings of the National Academy of Sciences of the United States of America, vol 113, iss 43
ResearcherID
The vast abundance of terpene natural products in nature is due to enzymes known as terpene synthases (TPSs) that convert acyclic prenyl diphosphate precursors into a multitude of cyclic and acyclic carbon skeletons. Yet the evolution of TPSs is not
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::19f1e22188bf0534cb945846aac26c48
https://hdl.handle.net/11858/00-001M-0000-002B-AA30-A21.11116/0000-0006-9B21-611858/00-001M-0000-002B-4FCA-6
https://hdl.handle.net/11858/00-001M-0000-002B-AA30-A21.11116/0000-0006-9B21-611858/00-001M-0000-002B-4FCA-6
Autor:
Jack Davitt, Thomas Lane, Ying Zhu, Caroline S. Rempe, C. Neal Stewart, Jun Yu, Eric J. Carpenter, Tao Liu, Carl J. Rothfels, Yinlong Xie, Patrick P. Edger, Yanhui Peng, Michael Melkonian, Gane Ka-Shu Wong, Sean W. Graham, Michael K. Deyholos, Dennis W. Stevenson, Yong Zhang, Mark W. Chase, Douglas E. Soltis, Jim Leebens-Mack, Margaret Staton, J. Chris Pires
Publikováno v:
BMC biotechnology, vol 16, iss 1
BMC Biotechnology
BMC Biotechnology
Background The ATP-binding cassette (ABC) transporter gene superfamily is ubiquitous among extant organisms and prominently represented in plants. ABC transporters act to transport compounds across cellular membranes and are involved in a diverse ran
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e318364005baa1585ef5c685ea30a45b
https://escholarship.org/uc/item/05t7f7sh
https://escholarship.org/uc/item/05t7f7sh