Zobrazeno 1 - 10
of 21
pro vyhledávání: '"Yingzhang Huang"'
Autor:
Jialei Sun, Na He, Longjian Niu, Yingzhang Huang, Wei Shen, Yuedong Zhang, Li Li, Chunhui Hou
Publikováno v:
Genomics, Proteomics & Bioinformatics, Vol 17, Iss 2, Pp 140-153 (2019)
Enhancers activate transcription in a distance-, orientation-, and position-independent manner, which makes them difficult to be identified. Self-transcribing active regulatory region sequencing (STARR-seq) measures the enhancer activity of millions
Externí odkaz:
https://doaj.org/article/926118e613f44921b4a461dbcb2a5d77
Publikováno v:
Molecules, Vol 26, Iss 4, p 1194 (2021)
Glandular trichome (GT) is the dominant site for artemisinin production in Artemisia annua. Several critical genes involved in artemisinin biosynthesis are specifically expressed in GT. However, the molecular mechanism of differential gene expression
Externí odkaz:
https://doaj.org/article/6c3ceebd783247098cdd5b7e54030a99
Autor:
Jing Wan, Yingzhang Huang, Jiashuo Li, Chunhui Hou, Yonglong Chen, Na He, Jialei Sun, Edwin Cheung, Piaopiao Zheng, Wenjing Wang, Zhaoying Shi, Yongjun Tan, Yuedong Zhang, Li Li, Chao Fang, Wei Shen, Longjian Niu
Publikováno v:
Nature Genetics
Animal interphase chromosomes are organized into topologically associating domains (TADs). How TADs are formed is not fully understood. Here, we combined high-throughput chromosome conformation capture and gene silencing to obtain insights into TAD d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f7fbac764d86a14986e63ac0d131740
https://doi.org/10.1038/s41588-021-00878-z
https://doi.org/10.1038/s41588-021-00878-z
Publikováno v:
Development (Cambridge, England). 149(18)
The morphology of the flowering plant is established during early embryogenesis. In recent years, many studies have focused on transcriptional profiling in plant embryogenesis, but the dynamic landscape of the Arabidopsis thaliana proteome remains el
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::69caae7b8a2127b688f05ddfbd6cfea3
https://pubmed.ncbi.nlm.nih.gov/35950926
https://pubmed.ncbi.nlm.nih.gov/35950926
Publikováno v:
Plant physiology and biochemistry : PPB. 168
ChIP-seq (Chromatin immunoprecipitation with sequencing) is the gold standard for determining genome-wide in vivo transcription factor binding sites, the first step for targets prediction and network construction. For non-model plants, it is challeng
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b245e3aa9ec779cfd062301ed679e11b
https://pubmed.ncbi.nlm.nih.gov/34678644
https://pubmed.ncbi.nlm.nih.gov/34678644
Publikováno v:
Molecules, Vol 26, Iss 1194, p 1194 (2021)
Molecules
Volume 26
Issue 4
Molecules
Volume 26
Issue 4
Glandular trichome (GT) is the dominant site for artemisinin production in Artemisia annua. Several critical genes involved in artemisinin biosynthesis are specifically expressed in GT. However, the molecular mechanism of differential gene expression
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::30199b978e0f057f83f04129ba268a87
https://www.mdpi.com/1420-3049/26/4/1194
https://www.mdpi.com/1420-3049/26/4/1194
STARR-seq assesses millions of fragments in parallel measuring enhancer activity quantitatively. Here we show that STARR-seq is critically flawed with a systematic error in the cells of Arabidopsis thaliana (A. thaliana). Large amount of self-transcr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b2146059960a1abb3e7cf14acb7c9235
https://doi.org/10.1101/2020.10.20.346908
https://doi.org/10.1101/2020.10.20.346908
Publikováno v:
International Journal of Molecular Sciences, Vol 21, Iss 6087, p 6087 (2020)
International Journal of Molecular Sciences
Volume 21
Issue 17
International Journal of Molecular Sciences
Volume 21
Issue 17
Long noncoding RNA (lncRNA)/microRNA(miRNA)/mRNA triplets contribute to cancer biology. However, identifying significative triplets remains a major challenge for cancer research. The dynamic changes among factors of the triplets have been less unders
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::91c9d23f13ac77e9244ced49c33b135d
https://www.mdpi.com/1422-0067/21/17/6087
https://www.mdpi.com/1422-0067/21/17/6087
Autor:
Longjian Niu, Yonglong Chen, Zhaoying Shi, Yingzhang Huang, Wei Shen, Yuedong Zhang, Li Li, Chao Fang, Chunhui Hou, Edwin Cheung, Piaopiao Zheng, Jiashuo Li, Na He, Jialei Sun, Jing Wan, Wenjing Wang
Metazoan genomes are folded into 3D structures in interphase nuclei. However, the molecular mechanism remains unknown. Here, we show that topologically associating domains (TADs) form in two waves during Xenopus tropicalis embryogenesis, first at zyg
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4d258f59b4e85c568e243f44f29fd248
Autor:
Daxin Jiang, Chunhui Hou, Wei Shen, Jialei Sun, Yu Chung Tse, Longjian Niu, Manyun Yang, Na He, Yuedong Zhang, Li Li, Jing Wan, Yingzhang Huang
Publikováno v:
Communications Biology
Communications Biology, Vol 2, Iss 1, Pp 1-8 (2019)
Communications Biology, Vol 2, Iss 1, Pp 1-8 (2019)
PCR amplification of Hi-C libraries introduces unusable duplicates and results in a biased representation of chromatin interactions. We present a simplified, fast, and economically efficient Hi-C library preparation procedure, SAFE Hi-C, which genera
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f7a00fb348466f6de67f667a3857af5
https://doi.org/10.1038/s42003-019-0519-y
https://doi.org/10.1038/s42003-019-0519-y