Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Yideng Cai"'
Autor:
Qian Ding, Wenyi Yang, Guangfu Xue, Hongxin Liu, Yideng Cai, Jinhao Que, Xiyun Jin, Meng Luo, Fenglan Pang, Yuexin Yang, Yi Lin, Yusong Liu, Haoxiu Sun, Renjie Tan, Pingping Wang, Zhaochun Xu, Qinghua Jiang
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-36 (2024)
Abstract Advances in single-cell transcriptomics provide an unprecedented opportunity to explore complex biological processes. However, computational methods for analyzing single-cell transcriptomics still have room for improvement especially in dime
Externí odkaz:
https://doaj.org/article/1acf3ecb89144f69bb113bc2a6df2a95
Autor:
Wenyi Yang, Pingping Wang, Shouping Xu, Tao Wang, Meng Luo, Yideng Cai, Chang Xu, Guangfu Xue, Jinhao Que, Qian Ding, Xiyun Jin, Yuexin Yang, Fenglan Pang, Boran Pang, Yi Lin, Huan Nie, Zhaochun Xu, Yong Ji, Qinghua Jiang
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)
Abstract The inference of cell–cell communication (CCC) is crucial for a better understanding of complex cellular dynamics and regulatory mechanisms in biological systems. However, accurately inferring spatial CCCs at single-cell resolution remains
Externí odkaz:
https://doaj.org/article/d5f02cc0b72b462c9dd2a7d430e53925
Autor:
Lixing Xiao, Haoxiu Sun, Rui Cheng, Rongrong Yang, Xiyun Jin, Zhaochun Xu, Yideng Cai, Yuexin Yang, Fenglan Pang, Guangfu Xue, Pingping Wang, Qinghua Jiang, Huan Nie
Publikováno v:
Molecular Therapy: Nucleic Acids, Vol 35, Iss 1, Pp 102129- (2024)
Circulating tumor cells (CTCs) that undergo epithelial-to-mesenchymal transition (EMT) can provide valuable information regarding metastasis and potential therapies. However, current studies on the EMT overlook alternative splicing. Here, we used sin
Externí odkaz:
https://doaj.org/article/3e4576260e4743abbe980deda0e6af15
Autor:
Xiyun Jin, Yideng Cai, Guangfu Xue, Jinhao Que, Rui Cheng, Yuexin Yang, Lixing Xiao, Xiaoyu Lin, Chang Xu, Pingping Wang, Zhaochun Xu, Huan Nie, Qinghua Jiang
Publikováno v:
Molecular Therapy: Nucleic Acids, Vol 32, Iss , Pp 189-202 (2023)
Tumor-infiltrating T cells are essential players in tumor immunotherapy. Great progress has been achieved in the investigation of T cell heterogeneity. However, little is well known about the shared characteristics of tumor-infiltrating T cells acros
Externí odkaz:
https://doaj.org/article/50d144dff6294c4f8ad45366b5e1470c
Publikováno v:
Frontiers in Bioengineering and Biotechnology, Vol 8 (2020)
The assignment of function to proteins at a large scale is essential for understanding the molecular mechanism of life. However, only a very small percentage of the more than 179 million proteins in UniProtKB have Gene Ontology (GO) annotations suppo
Externí odkaz:
https://doaj.org/article/443c4ad3c6344a12a85b9ce35510126f
Autor:
Wenyi Yang, Zhaochun Xu, Meng Luo, Yideng Cai, Chang Xu, Pingping Wang, Songren Wei, Guangfu Xue, Xiyun Jin, Rui Cheng, Jinhao Que, Wenyang Zhou, Fenglan Pang, Huan Nie, Qinghua Jiang
With the rapid development of high throughput single-cell RNA sequencing (scRNA-seq) technologies, it is of high importance to identify Cell-cell interactions (CCIs) from the ever-increasing scRNA-seq data. However, limited by the algorithmic constra
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4ef3cb2d146d84da1bab14bff753c226
https://doi.org/10.1101/2022.11.11.516061
https://doi.org/10.1101/2022.11.11.516061
Autor:
Qian Ding, Wenyi Yang, Meng Luo, Chang Xu, Zhaochun Xu, Fenglan Pang, Yideng Cai, Anastasia A Anashkina, Xi Su, Na Chen, Qinghua Jiang
Publikováno v:
Briefings in bioinformatics. 23(5)
The rapid development of single-cel+l RNA sequencing (scRNA-seq) technology provides unprecedented opportunities for exploring biological phenomena at the single-cell level. The discovery of cell types is one of the major applications for researchers
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e971f74058963cd5cb5ee63a8b1362d4
https://pubmed.ncbi.nlm.nih.gov/35870203
https://pubmed.ncbi.nlm.nih.gov/35870203
Autor:
Chang Xu, Xiyun Jin, Songren Wei, Pingping Wang, Meng Luo, Zhaochun Xu, Wenyi Yang, Yideng Cai, Lixing Xiao, Xiaoyu Lin, Hongxin Liu, Rui Cheng, Fenglan Pang, Rui Chen, Xi Su, Ying Hu, Guohua Wang, Qinghua Jiang
Publikováno v:
Nucleic Acids Research. 50:e131-e131
Recent advances in spatial transcriptomics (ST) have brought unprecedented opportunities to understand tissue organization and function in spatial context. However, it is still challenging to precisely dissect spatial domains with similar gene expres
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d6aeeb4d197a87bcd997a1670ba7ccab
https://doi.org/10.1093/nar/gkac901
https://doi.org/10.1093/nar/gkac901
Autor:
Weizhong Lin, Zhaochun Xu, Xiyun Jin, Yideng Cai, Chang Xu, Wenyang Zhou, Huan Nie, Qinghua Jiang, Pingping Wang, Wenyi Yang, Meng Luo, Guangfu Xue
Publikováno v:
Briefings in bioinformatics. 22(6)
Accurate prediction of immunogenic peptide recognized by T cell receptor (TCR) can greatly benefit vaccine development and cancer immunotherapy. However, identifying immunogenic peptides accurately is still a huge challenge. Most of the antigen pepti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2a697ab5c0a42db6da02f0aeaab567b
https://pubmed.ncbi.nlm.nih.gov/34415016
https://pubmed.ncbi.nlm.nih.gov/34415016
Publikováno v:
Frontiers in Bioengineering and Biotechnology
Frontiers in Bioengineering and Biotechnology, Vol 8 (2020)
Frontiers in Bioengineering and Biotechnology, Vol 8 (2020)
The assignment of function to proteins at a large scale is essential for understanding the molecular mechanism of life. However, only a very small percentage of the more than 179 million proteins in UniProtKB have Gene Ontology (GO) annotations suppo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b28b156dd0e860b3729662dda1a43d27
https://pubmed.ncbi.nlm.nih.gov/32411695
https://pubmed.ncbi.nlm.nih.gov/32411695