Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes.

Autor: Thybert D; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.; Earlham Institute, Norwich Research Park, Norwich NR4 7UH, United Kingdom., Roller M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Navarro FCP; Yale University Medical School, Computational Biology and Bioinformatics Program, New Haven, Connecticut 06520, USA., Fiddes I; Department of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA., Streeter I; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Feig C; University of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge CB2 0RE, United Kingdom., Martin-Galvez D; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Kolmogorov M; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California 92092, USA., Janoušek V; Department of Zoology, Faculty of Science, Charles University in Prague, 128 44 Prague, Czech Republic., Akanni W; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Aken B; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Aldridge S; University of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge CB2 0RE, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Chakrapani V; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Chow W; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Clarke L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Cummins C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Doran A; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Dunn M; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Goodstadt L; Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, United Kingdom., Howe K; Yale University Medical School, Computational Biology and Bioinformatics Program, New Haven, Connecticut 06520, USA., Howell M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Josselin AA; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Karn RC; Department of Medicine, College of Medicine, University of Arizona, Tuscon, Arizona 85724, USA., Laukaitis CM; Department of Medicine, College of Medicine, University of Arizona, Tuscon, Arizona 85724, USA., Jingtao L; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Martin F; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Muffato M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Nachtweide S; Institute of Mathematics and Computer Science, University of Greifswald, Greifswald 17487, Germany., Quail MA; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Sisu C; Yale University Medical School, Computational Biology and Bioinformatics Program, New Haven, Connecticut 06520, USA., Stanke M; Institute of Mathematics and Computer Science, University of Greifswald, Greifswald 17487, Germany., Stefflova K; University of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge CB2 0RE, United Kingdom., Van Oosterhout C; School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, United Kingdom., Veyrunes F; Institut des Sciences de l'Evolution de Montpellier, Université Montpellier/CNRS, 34095 Montpellier, France., Ward B; Earlham Institute, Norwich Research Park, Norwich NR4 7UH, United Kingdom., Yang F; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Yazdanifar G; Department of Medicine, College of Medicine, University of Arizona, Tuscon, Arizona 85724, USA., Zadissa A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Adams DJ; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Brazma A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Gerstein M; Yale University Medical School, Computational Biology and Bioinformatics Program, New Haven, Connecticut 06520, USA., Paten B; Department of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA., Pham S; Bioturing Inc, San Diego, California 92121, USA., Keane TM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Odom DT; University of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge CB2 0RE, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom., Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.

Publikováno v: Genome research [Genome Res] 2018 Apr; Vol. 28 (4), pp. 448-459. Date of Electronic Publication: 2018 Mar 21.

Mouse Genome Informatics (MGI): latest news from MGD and GXD.

Autor: Ringwald, Martin¹ (AUTHOR) martin.ringwald@jax.org, Richardson, Joel E.¹ (AUTHOR), Baldarelli, Richard M.¹ (AUTHOR), Blake, Judith A.¹ (AUTHOR), Kadin, James A.¹ (AUTHOR), Smith, Cynthia¹ (AUTHOR), Bult, Carol J.¹ (AUTHOR) carol.bult@jax.org

Publikováno v: Mammalian Genome. Mar2022, Vol. 33 Issue 1, p4-18. 15p.

Functional signatures of evolutionarily young CTCF binding sites.

Autor: Azazi, Dhoyazan¹ (AUTHOR), Mudge, Jonathan M.¹ (AUTHOR), Odom, Duncan T.^2,3 (AUTHOR), Flicek, Paul^1,2,4 (AUTHOR) flicek@ebi.ac.uk

Publikováno v: BMC Biology. 9/23/2020, Vol. 18 Issue 1, p1-24. 24p.