Zobrazeno 1 - 10
of 42
pro vyhledávání: '"Yatish Turakhia"'
Autor:
Nicola De Maio, William Boulton, Lukas Weilguny, Conor R Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 4, p e1010056 (2022)
Sequence simulators are fundamental tools in bioinformatics, as they allow us to test data processing and inference tools, and are an essential component of some inference methods. The ongoing surge in available sequence data is however testing the l
Externí odkaz:
https://doaj.org/article/6d5c8fc4c57b436880fe75ca8bd66ce6
Autor:
Yatish Turakhia, Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R Walker, Angie S Hinrichs, Jason D Fernandes, Rui Borges, Greg Slodkowicz, Lukas Weilguny, David Haussler, Nick Goldman, Russell Corbett-Detig
Publikováno v:
PLoS Genetics, Vol 16, Iss 11, p e1009175 (2020)
The SARS-CoV-2 pandemic has led to unprecedented, nearly real-time genetic tracing due to the rapid community sequencing response. Researchers immediately leveraged these data to infer the evolutionary relationships among viral samples and to study k
Externí odkaz:
https://doaj.org/article/20e8f63f79c144ba9949393687772d59
Autor:
Adriano de Bernardi Schneider, Michelle Su, Angie S. Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A. Wadford, Àine O’Toole, Emily Scher, Marc D. Perry, Yatish Turakhia, Nicola De Maio, Scott Hughes, Russ Corbett-Detig
With the rapid spread and evolution of SARS-CoV-2, the ability to monitor its transmission and distinguish among viral lineages is critical for pandemic response efforts. The most commonly used software for the lineage assignment of newly isolated SA
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::139bd3170188b2b06f9dae520a04d10e
https://doi.org/10.1101/2023.05.26.542489
https://doi.org/10.1101/2023.05.26.542489
Autor:
Alexander M Kramer, Bryan Thornlow, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S Hinrichs, Robert Lanfear, Yatish Turakhia, Russell Corbett-Detig
Publikováno v:
Systematic Biology.
Phylogenetics has been foundational to SARS-CoV-2 research and public health policy, assisting in genomic surveillance, contact tracing, and assessing emergence and spread of new variants. However, phylogenetic analyses of SARS-CoV-2 have often relie
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3a5695be553dbecae19e6054626d230a
https://doi.org/10.1093/sysbio/syad031
https://doi.org/10.1093/sysbio/syad031
Identifying and tracking recombinant strains of SARS-CoV-2 is critical to understanding the evolution of the virus and controlling its spread. But confidently identifying SARS-CoV-2 recombinants from thousands of new genome sequences that are being s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::58877df79d5d897c1f03de2202834b81
https://doi.org/10.1101/2023.02.17.529036
https://doi.org/10.1101/2023.02.17.529036
Autor:
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T. Wolfinger, Angie S. Hinrichs, Aine Niamh O’Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell Corbett-Detig
Pathogen nomenclature systems are a key component of effective communication and collaboration for researchers and public health workers. Since February 2021, the Pango nomenclature for SARS-CoV-2 has been sustained by crowdsourced lineage proposals
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8477adab4d0f13e0543d0bc597266660
https://doi.org/10.1101/2023.02.03.527052
https://doi.org/10.1101/2023.02.03.527052
Autor:
Christopher Ruis, Thomas P. Peacock, Luis Mariano Polo, Diego Masone, Maria Soledad Alvarez, Angie S. Hinrichs, Yatish Turakhia, Ye Cheng, Jakob McBroome, Russell Corbett-Detig, Julian Parkhill, R. Andres Floto
Exposure to different mutagens leaves distinct mutational patterns that can allow prediction of pathogen replication niches (Ruis 2022). We therefore hypothesised that analysis of SARS-CoV-2 mutational spectra might show lineage-specific differences,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::88858069875c9e18f25e3af6e3d7a0c6
https://doi.org/10.1101/2022.09.27.509649
https://doi.org/10.1101/2022.09.27.509649
Autor:
Nick Goldman, Conor R Walker, De Maio N, Russell Corbett-Detig, Lukas Weilguny, Yatish Turakhia
Publikováno v:
PLoS computational biology, vol 18, iss 4
bioRxiv
article-version (status) pre
article-version (number) 1
bioRxiv
article-version (status) pre
article-version (number) 1
Funder: European Molecular Biology Laboratory; funder-id: http://dx.doi.org/10.13039/100013060
Funder: Schmidt Futures Foundation
Sequence simulators are fundamental tools in bioinformatics, as they allow us to test data processing and infe
Funder: Schmidt Futures Foundation
Sequence simulators are fundamental tools in bioinformatics, as they allow us to test data processing and infe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2224a1c8d9ad24683d5518e835a94901
Autor:
Bryan, Thornlow, Alexander, Kramer, Cheng, Ye, Nicola, De Maio, Jakob, McBroome, Angie S, Hinrichs, Robert, Lanfear, Yatish, Turakhia, Russell, Corbett-Detig
Publikováno v:
bioRxiv : the preprint server for biology.
Phylogenetics has been foundational to SARS-CoV-2 research and public health policy, assisting in genomic surveillance, contact tracing, and assessing emergence and spread of new variants. However, phylogenetic analyses of SARS-CoV-2 have often relie
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::ada25a41e8c78493a0399091eb05f806
https://pubmed.ncbi.nlm.nih.gov/35611334
https://pubmed.ncbi.nlm.nih.gov/35611334
Autor:
Yatish Turakhia
Publikováno v:
2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a8b96822a79363af738d54aea63e4788
https://doi.org/10.1109/ipdpsw55747.2022.00035
https://doi.org/10.1109/ipdpsw55747.2022.00035