Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Yasuyo Ikegawa"'
Autor:
Gert-Jan Bekker, Takahiro Kudou, Yasuyo Ikegawa, Takeshi Kawabata, Masashi Yokochi, Genji Kurisu, Hirofumi Suzuki, Kei Yura, Toshimichi Fujiwara, Takeshi Iwata
Publikováno v:
Protein Science : A Publication of the Protein Society
Protein Data Bank Japan (PDBj), a founding member of the worldwide Protein Data Bank (wwPDB) has accepted, processed and distributed experimentally determined biological macromolecular structures for 20 years. During that time, we have continuously m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1aa6259017ae3d35c0f9f3c1b145403
https://doi.org/10.1002/pro.4211
https://doi.org/10.1002/pro.4211
Autor:
Marcin Wojdyr, Paul D. Adams, David G. Brown, Zukang Feng, Yasuyo Ikegawa, Lora Mak, Minyu Chen, Billy K. Poon, John D. Westbrook, Ezra Peisach, Jasmine Young, Helen M. Berman, Masashi Yokochi, Nigel W. Moriarty, Yu-He Liang, Stephen K. Burley, John L. Markley, Garib N. Murshudov, John M. Berrisford, Eldon L. Ulrich, Sameer Velankar, Yumiko Kengaku, Aleksandras Gutmanas, Dorothee Liebschner, C. Flensburg, Pavel V. Afonine, Kumaran Baskaran, Clemens Vonrhein, Jeffrey C. Hoch, Eugene Krissinel, Irina Persikova, Genji Kurisu, Oleg V. Sobolev, Martin E.M. Noble, Gérard Bricogne
Publikováno v:
Acta crystallographica. Section D, Structural biology, vol 75, iss Pt 4
This letter announces that PDBx/mmCIF format files will become mandatory for crystallographic depositions to the Protein Data Bank (PDB).
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::88e593a136cedb0a65b4e5c2e32df2a6
https://doi.org/10.1107/s2059798319004522
https://doi.org/10.1107/s2059798319004522
Autor:
John D. Westbrook, Stephen K. Burley, Zukang Feng, Ezra Peisach, Chenghua Shao, John M. Berrisford, Jasmine Young, Genji Kurisu, Sameer Velankar, Yasuyo Ikegawa
Publikováno v:
Glycobiology
Since 1971, the Protein Data Bank (PDB) has served as the single global archive for experimentally determined 3D structures of biological macromolecules made freely available to the global community according to the FAIR principles of Findability–A
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e823f50a837a334b36bd45bb46eb3d62
https://pubmed.ncbi.nlm.nih.gov/33978738
https://pubmed.ncbi.nlm.nih.gov/33978738
Autor:
Masashi Yokochi, Ju Yaen Kim, Chenghua Shao, John M. Berrisford, Hongyang Yao, Miron Livny, Stephen Anyango, Abhik Mukhopadhyay, Romana Gáborová, Yi-Ping Tao, Monica Sekharan, Aleksandras Gutmanas, Jose M. Dana, Mandar Deshpande, Charmi Bhikadiya, Yannis Ioannidis, Pedro Romero, Jonathan R. Wedell, Eldon L. Ulrich, Gert-Jan Bekker, Chris Randle, Chunxiao Bi, Jeffrey C. Hoch, Nurul Nadzirin, Jaroslav Koča, Yumiko Kengaku, Jasmine Young, Cole Christie, John D. Westbrook, Naohiro Kobayashi, Alexander S. Rose, Sameer Velankar, David Sehnal, Lukáš Pravda, David R. Armstrong, Hasumi Cho, Genji Kurisu, Lora Mak, John L. Markley, Saqib Mir, Sutapa Ghosh, Ardan Patwardhan, Zukang Feng, Stephen K. Burley, Robert Lowe, David S. Goodsell, Hirofumi Suzuki, Maria Voigt, Paul Gane, Jose M. Duarte, Osman Salih, Irina Periskova, Matthew J. Conroy, Toshimichi Fujiwara, Yasuyo Ikegawa, Takahiro Kudou, Dimitri Maziuk, Typhaine Paysan-Lafosse, Brian P. Hudson, Christine Zardecki, Sreenath Nair, Gerard J. Kleywegt, Marina A. Zhuravleva, Shuchismita Dutta, Dmytro Guzenko, Kumaran Baskaran, Rachel Kramer Green, Ezra Peisach, Li Chen, Reiko Yamashita, Vladimir Guranovic, Yu-He Liang, Takeshi Iwata, Atsushi Nakagawa, Haruki Nakamura, Junko Sato, Radka Svobodová Vařeková, Helen M. Berman, Deepti Gupta, Luigi Di Costanzo, Mihaly Varadi, Yana Valasatava
Publikováno v:
Nucleic Acids Research
The Protein Data Bank (PDB) is the single global archive of experimentally determined three-dimensional (3D) structure data of biological macromolecules. Since 2003, the PDB has been managed by the Worldwide Protein Data Bank (wwPDB; wwpdb.org), an i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::270875b3782759eb0deca83927e6993c
https://doi.org/10.1093/nar/gky949
https://doi.org/10.1093/nar/gky949
Autor:
John D. Westbrook, Jeffrey C. Hoch, Genji Kurisu, Yasuyo Ikegawa, Gregg V. Crichlow, Catherine L. Lawson, John M. Berrisford, Sanja Abbott, Kumaran Baskaran, Stephen K. Burley, Zukang Feng, Masashi Yokochi, Jasmine Young
Publikováno v:
Acta Crystallographica Section A Foundations and Advances. 77:a193-a193
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::05050e88ae6d1724ec12f11aef27198e
https://doi.org/10.1107/s0108767321098068
https://doi.org/10.1107/s0108767321098068
Autor:
Zukang Feng, John D. Westbrook, Monica Sekharan, Yasuyo Ikegawa, Haruki Nakamura, Stephen K. Burley, Pieter M. S. Hendrickx, Chenghua Shao, Kumaran Baskaran, Aleksandras Gutmanas, Sameer Velankar, Eduardo Sanz Garcia, Ezra Peisach, Ardan Patwardhan, Thomas J. Oldfield, Catherine L. Lawson, John L. Markley, Helen M. Berman, Oliver S. Smart, John M. Berrisford, Swanand Gore, Eldon L. Ulrich, Abhik Mukhopadhyay, Gaurav Sahni, Jasmine Young, Sanchayita Sen, Gerard J. Kleywegt, Martha Quesada, Huanwang Yang, Naohiro Kobayashi, Reiko Yamashita, Brian P. Hudson, Steve Mading, Lora Mak
Publikováno v:
Structure(London, England:1993)
Structure
PubMed Central
Structure
PubMed Central
Summary The Worldwide PDB recently launched a deposition, biocuration, and validation tool: OneDep. At various stages of OneDep data processing, validation reports for three-dimensional structures of biological macromolecules are produced. These repo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e5787d7df0b18c43851a67b2f8e9f3be
http://europepmc.org/articles/PMC5718880
http://europepmc.org/articles/PMC5718880
Autor:
Gert-Jan Bekker, Haruki Nakamura, Hirofumi Suzuki, Takeshi Kawabata, Yasuyo Ikegawa, Yuko Tsuchiya, Akira R. Kinjo
Publikováno v:
Nucleic Acids Research
The Protein Data Bank Japan (PDBj, http://pdbj.org), a member of the worldwide Protein Data Bank (wwPDB), accepts and processes the deposited data of experimentally determined macromolecular structures. While maintaining the archive in collaboration
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca64236df113426a8747614a2196291a
https://doi.org/10.1093/nar/gkw962
https://doi.org/10.1093/nar/gkw962
Autor:
Marina Zhuravleva, Ezra Peisach, Monica Sekharan, Glen van Ginkel, Reiko Igarashi, Jasmine Young, M. Saqib Mir, Lora Mak, Dimitris Dimitropoulos, Raul Sala, David R. Armstrong, Sanchayita Sen, Sameer Velankar, Gerard J. Kleywegt, Li Chen, Lihua Tan, Swanand Gore, Reiko Yamashita, Sutapa Ghosh, Eduardo Sanz-García, Zukang Feng, John D. Westbrook, Vladimir Guranovic, Yu-He Liang, Aleksandras Gutmanas, Thomas J. Oldfield, Brian P. Hudson, Huanwang Yang, Minyu Chen, Guanghua Gao, G. Jawahar Swaminathan, Eldon L. Ulrich, Yasuyo Ikegawa, Naohiro Kobayashi, Irina Persikova, Luigi Di Costanzo, Steve Mading, John L. Markley, Chenghua Shao, Helen M. Berman, Luana Rinaldi, Ardan Patwardhan, John M. Berrisford, Abhik Mukhopadhyay, Haruki Nakamura, Stephen K. Burley, Catherine L. Lawson, Pieter M. S. Hendrickx, Martha Quesada
Publikováno v:
Structure
PubMed Central
PubMed Central
OneDep, a unified system for deposition, biocuration, and validation of experimentally determined structures of biological macromolecules to the Protein Data Bank (PDB) archive, has been developed as a global collaboration by the Worldwide Protein Da
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ba14ab042ffdb8e18b0349273b3164a7
Autor:
Marina Zhuravleva, Raul Sala, Lora Mak, Stephen K. Burley, Monica Sekharan, Oliver S. Smart, Brian P. Hudson, Ardan Patwardhan, Gerard J. Kleywegt, Alice R. Clark, Guanghua Gao, Kumaran Baskaran, Sutapa Ghosh, David R. Armstrong, Kayoko Nishiyama, John M. Berrisford, Ezra Peisach, Abhik Mukhopadhyay, G. Jawahar Swaminathan, Huanwang Yang, Minyu Chen, Catherine L. Lawson, Thomas J. Oldfield, Junko Sato, Zukang Feng, Helen M. Berman, Yumiko Kengaku, Chenghua Shao, Glen van Ginkel, Irina Persikova, John L. Markley, Genji Kurisu, Yasuyo Ikegawa, Jasmine Young, Pieter M. S. Hendrickx, Luigi Di Costanzo, Aleksandras Gutmanas, John D. Westbrook, Reiko Igarashi, Buvaneswari Coimbatore Narayanan, Li Chen, Eduardo Sanz-García, Vladimir Guranovic, Yu-He Liang, Haruki Nakamura, Gaurav Sahni, Sameer Velankar, Sanchayita Sen, Lihua Tan, Swanand Gore, Dimitris Dimitropoulos
Publikováno v:
Database
Database: The Journal of Biological Databases and Curation
PubMed Central
Database: The Journal of Biological Databases and Curation
PubMed Central
The Protein Data Bank (PDB) is the single global repository for experimentally determined 3D structures of biological macromolecules and their complexes with ligands. The worldwide PDB (wwPDB) is the international collaboration that manages the PDB a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0971262380065fa844429033dae13941
https://doi.org/10.1093/database/bay002
https://doi.org/10.1093/database/bay002
Publikováno v:
Nihon Kessho Gakkaishi. 61:159-160
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4cbb5ad3239386d5203604fb99173887
https://doi.org/10.5940/jcrsj.61.159
https://doi.org/10.5940/jcrsj.61.159