Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Yasumasa Shigemoto"'
Autor:
Chang-Hung Chou, Yu-Chung Chiang, Xue-Jun Ge, Chi-Chuan Hwang, Tsai Wen Hsu, Tzen Yuh Chiang, Charles Chen, Takashi Gojobori, Hao Jen Huang, Naoki Osada, Chuan Wen Ho, Yasumasa Shigemoto, Chao Li Huang, Tai Han Wu
Publikováno v:
The Plant Journal. 80:834-847
Young incipient species provide ideal materials for untangling the process of ecological speciation in the presence of gene flow. The Miscanthus floridulus/sinensis complex exhibits diverse phenotypic and ecological differences despite recent diverge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f2056b022d13efed689e9598969a27e
https://doi.org/10.1111/tpj.12676
https://doi.org/10.1111/tpj.12676
Publikováno v:
Nucleic Acids Research
DNA Data Bank of Japan (DDBJ) provides Web-based systems for biological analysis, called Web APIs for biology (WABI). So far, we have developed over 20 SOAP services and several workflows that consist of a series of method invocations. In this articl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::701c4ebdf265b1731e47b891e5766737
https://doi.org/10.1093/nar/gkp300
https://doi.org/10.1093/nar/gkp300
Publikováno v:
Joho Chishiki Gakkaishi. 19:86-91
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0c9b532e0f78abe19fb64b792b352d13
https://doi.org/10.2964/jsik.19-86
https://doi.org/10.2964/jsik.19-86
Autor:
Toshio Kojima, Yasumasa Shigemoto, Martin Senger, Atsuhiro Mukaiyama, Takeshi Tomiki, Matthew Darlison, Mark Woon, Hideaki Sugawara, Haseena Rajeevan, Akihiko Konagaya, Heikki Lehväslaiho, Kimitoshi Naito, Hiroshi Mizushima, David Fredman, Gudmundur A. Thorisson, Juha Muilu, Takashige Oroguchi, Masako Kuroda, Debasis Dash, Ituro Inoue, Albert V. Smith, Anthony J. Brookes
Publikováno v:
Human Mutation; Vol 30
Human Mutation
Human Mutation
Torrents of genotype-phenotype data are being generated, all of which must be captured, processed, integrated, and exploited. To do this optimally requires the use of standard and interoperable "object models," providing a description of how to parti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b6c1257d3a66ec04d40a2d32e822d1a0
Autor:
Naoto Tanaka, Yasumasa Shigemoto, Hideaki Sugawara, Takashi Abe, Yoshikazu Kuwana, Yoshiyuki Suzuki, Masaki Hirahata, Satoru Miyazaki
Publikováno v:
Nucleic Acids Research
Genome Information Broker for Viruses (GIB-V) is a comprehensive virus genome/segment database. We extracted 18 418 complete virus genomes/segments from the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc.org/) by DN
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a8ff080aa91cdf8082db84451dc4653f
Autor:
Yukie Akune, Akira R. Kinjo, Toshiaki Katayama, Mizuki Morita, Takaaki Mori, Soichi Ogishima, Yoshinobu Igarashi, Takeo Katoda, Takatomo Fujisawa, Shuichi Kawashima, Mitsuteru Nakao, Anna Kokubu, Yasumasa Shigemoto, Kiyoko F. Aoki-Kinoshita, Shinobu Okamoto, Yi An Chen
Publikováno v:
Journal of Biomedical Semantics
Background Linked Data has gained some attention recently in the life sciences as an effective way to provide and share data. As a part of the Semantic Web, data are linked so that a person or machine can explore the web of data. Resource Description
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a66408697f54b2110370ff097ef6e4f2
http://europepmc.org/articles/PMC4429360
http://europepmc.org/articles/PMC4429360
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
Autor:
Kazuho Ikeo, Takashi Gojobori, Yasuyuki Fujii, Takeshi Itoh, Tsuyoshi Tanaka, Hajime Ohyanagi, Baltazar A. Antonio, Yasumasa Shigemoto, Hiroaki Sakai, Kaori Yamaguchi, Yoshiaki Nagamura, Takuya Habara, Tadashi Imanishi, Takuji Sasaki
Publikováno v:
Nucleic Acids Research
Scopus-Elsevier
Scopus-Elsevier
With the completion of the rice genome sequencing, a standardized annotation is necessary so that the information from the genome sequence can be fully utilized in understanding the biology of rice and other cereal crops. An annotation jamboree was h
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f30df269b3f4eddb9d504d68e5a8266
https://doi.org/10.1093/nar/gkj094
https://doi.org/10.1093/nar/gkj094
Publikováno v:
Proceedings of Annual Conference, Japan Society of Information and Knowledge. 9:33-36
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0167692a001ec98c5a6b021fd82fa83f
https://doi.org/10.2964/jsikproc.9.0_33
https://doi.org/10.2964/jsikproc.9.0_33
Autor:
Pjotr Prins, Hammad Afzal, Kyung Hoon Kwon, Bruno Aranda, Toshihisa Takagi, Luke McCarthy, Fumikazu Konishi, Young Joo Kim, Toshiaki Katayama, James Taylor, Taro L. Saito, Shuichi Kawashima, Peter J. A. Cock, Kazuhiro Hayashi, Kozo Nishida, Keiichiro Ono, Venkata P. Satagopam, Richard Smith, Gos Micklem, Kazuki Oshita, Hideya Kawaji, Nobuhiro Kido, David Withers, Shinobu Okamoto, Pierre Lindenbaum, Keun Joon Park, Alberto Labarga, Tatsuya Nishizawa, Mark Wilkinson, Eli Kaminuma, Ryosuke Ishiwata, Andrea Splendiani, Hong-Woo Chun, Arek Kasprzyk, Soichi Ogishima, Kenta Oouchida, Kiyoshi Asai, Katsuhiko Murakami, Jerven Bolleman, Christian M. Zmasek, Jan Aerts, Raoul J. P. Bonnal, Erick Antezana, Mitsuteru Nakao, Naohisa Goto, Shoko Kawamoto, Yasunori Yamamoto, Chisato Yamasaki, Hideaki Sugawara, Atsuko Yamaguchi, Koji Nagao, Kosaku Okubo, Brad Chapman, Francois Belleau, Rutger A. Vos, Tore Eriksson, Paul M. K. Gordon, Yu Lin, Anna-Lena Lamprecht, Akira R. Kinjo, Heiko Horn, Yasumasa Shigemoto, Kunihiro Nishimura, Hideyuki Morita, Matthias Samwald, Kazuharu Arakawa
Publikováno v:
Journal of Biomedical Semantics
Journal of Biomedical Semantics, 4
Katayama, Toshiaki; Wilkinson, Mark D; Micklem, Gos; Kawashima, Shuichi; Yamaguchi, Atsuko; Nakao, Mitsuteru; et al.(2013). The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics, 4(1), 6. doi: http://dx.doi.org/10.1186/2041-1480-4-6. Retrieved from: http://www.escholarship.org/uc/item/3x80x9f7
Journal of Biomedical Semantics 4 (2013)
Journal of Biomedical Semantics, 4
Katayama, Toshiaki; Wilkinson, Mark D; Micklem, Gos; Kawashima, Shuichi; Yamaguchi, Atsuko; Nakao, Mitsuteru; et al.(2013). The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics, 4(1), 6. doi: http://dx.doi.org/10.1186/2041-1480-4-6. Retrieved from: http://www.escholarship.org/uc/item/3x80x9f7
Journal of Biomedical Semantics 4 (2013)
Background BioHackathon 2010 was the third in a series of meetings hosted by the Database Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon series is to improve the quality and accessibility of life science resear
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e925484f33cc05ffeb5864dab75b5074
https://pubmed.ncbi.nlm.nih.gov/23398680
https://pubmed.ncbi.nlm.nih.gov/23398680
Autor:
Keiichiro Ono, Raoul J. P. Bonnal, Lukasz Salwinski, Kazuharu Arakawa, Shinobu Okamoto, Daron M. Standley, Rene Ranzinger, Hiroyuki Nakamura, Richard Bruskiewich, Jan Christian Bryne, Toshihisa Takagi, Richard Holland, Chikashi Nobata, Michael Kuhn, Florian Reisinger, Paul M. K. Gordon, Stuart Owen, Yasukazu Nakamura, Yoshinobu Kano, Pjotr Prins, Tamotsu Noguchi, Toshiyuki Tashiro, Arnaud Kerhornou, Yasunori Yamamoto, Heikki Lehväslaiho, Tom Oinn, Oswaldo Trelles, Andreas Groscurth, Hilmar Lapp, Christian M. Zmasek, Martin Senger, Akira Funahashi, Rutger A. Vos, Shuichi Kawashima, Lord H. Barboza, Kiyoshi Asai, William S. York, Edward A. Kawas, Atsuko Yamaguchi, Bruno Aranda, Tatsuya Nishizawa, Alex Gutteridge, Mark Wilkinson, José M. Fernández, Kiyoko F. Aoki-Kinoshita, Jan Aerts, Naohisa Goto, Yasumasa Shigemoto, Matthew Pocock, Akira R. Kinjo, Mark Schreiber, Evangelos Pafilis, Hideaki Sugawara, Toshiaki Katayama, Eri Kibukawa, Hong-Woo Chun, Mitsuteru Nakao
Publikováno v:
Journal of Biomedical Semantics, 1
Katayama, Toshiaki; Arakawa, Kazuharu; Nakao, Mitsuteru; Ono, Keiichiro; Aoki-Kinoshita, Kiyoko F; Yamamoto, Yasunori; et al.(2010). The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Journal of Biomedical Semantics, 1(1), 8. doi: http://dx.doi.org/10.1186/2041-1480-1-8. Retrieved from: http://www.escholarship.org/uc/item/6v60h2hh
Journal of Biomedical Semantics 1 (2010)
Katayama, Toshiaki; Arakawa, Kazuharu; Nakao, Mitsuteru; Ono, Keiichiro; Aoki-Kinoshita, Kiyoko F; Yamamoto, Yasunori; et al.(2010). The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Journal of Biomedical Semantics, 1(1), 8. doi: http://dx.doi.org/10.1186/2041-1480-1-8. Retrieved from: http://www.escholarship.org/uc/item/6v60h2hh
Journal of Biomedical Semantics 1 (2010)
Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer entire datab
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0134a8494989978db4664c9e3670d2e5
https://doi.org/10.1186/2041-1480-1-8
https://doi.org/10.1186/2041-1480-1-8