Výsledky vyhledávání - "Yassin Refahi"

Akademický článek

Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets

Autor: Anuradha Kar, Manuel Petit, Yassin Refahi, Guillaume Cerutti, Christophe Godin, Jan Traas

Publikováno v: PLoS Computational Biology, Vol 18, Iss 4 (2022)

Segmenting three-dimensional (3D) microscopy images is essential for understanding phenomena like morphogenesis, cell division, cellular growth, and genetic expression patterns. Recently, deep learning (DL) pipelines have been developed, which claim

Externí odkaz: https://doaj.org/article/cbb9ab9cbdbe41748a25d8da1a77fa06

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Akademický článek

Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal

Autor: Heather M Meyer, José Teles, Pau Formosa-Jordan, Yassin Refahi, Rita San-Bento, Gwyneth Ingram, Henrik Jönsson, James C W Locke, Adrienne H K Roeder

Publikováno v: eLife, Vol 6 (2017)

Multicellular development produces patterns of specialized cell types. Yet, it is often unclear how individual cells within a field of identical cells initiate the patterning process. Using live imaging, quantitative image analyses and modeling, we s

Externí odkaz: https://doaj.org/article/89a8d3b5eb77485cac7874e5480dbb50

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Akademický článek

A stochastic multicellular model identifies biological watermarks from disorders in self-organized patterns of phyllotaxis

Autor: Yassin Refahi, Géraldine Brunoud, Etienne Farcot, Alain Jean-Marie, Minna Pulkkinen, Teva Vernoux, Christophe Godin

Publikováno v: eLife, Vol 5 (2016)

Exploration of developmental mechanisms classically relies on analysis of pattern regularities. Whether disorders induced by biological noise may carry information on building principles of developmental systems is an important debated question. Here

Externí odkaz: https://doaj.org/article/5ba8bc46b0744bf6ba3305a797ccef1c

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Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets

Autor: Guillaume Cerutti, Christophe Godin, Jan Traas, Yassin Refahi, Anuradha Kar, Petit M

Publikováno v: PLoS Computational Biology
PLoS Computational Biology, 2022, 18 (4), pp.e1009879. ⟨10.1371/journal.pcbi.1009879⟩

Segmenting three dimensional microscopy images is essential for understanding phenomena like morphogenesis, cell division, cellular growth and genetic expression patterns. Recently, deep learning (DL) pipelines have been developed which claim to prov

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::95d771fd005e463f0325bcbb4facbd8c
https://pubmed.ncbi.nlm.nih.gov/35421081

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A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control

Autor: Laetitia Vachez, Elliot M. Meyerowitz, Jan Traas, Argyris Zardilis, Yassin Refahi, Gael Michelin, Pradeep Das, Henrik Jönsson, Christophe Godin, Emmanuel Faure, Nathanaël Prunet, Feng Zhao, Jonathan Legrand, Bruno Leggio, Raymond Wightman, Grégoire Malandain, Anne Evodie Risson, Alessia Armezzani

Publikováno v: Developmental Cell
Developmental Cell, 2021, 56 (4), pp.540-556.e8. ⟨10.1016/j.devcel.2021.01.019⟩
Developmental Cell, Elsevier, 2021, 56 (4), pp.540-556.e8. ⟨10.1016/j.devcel.2021.01.019⟩

The link between gene regulation and morphogenesis of multicellular organisms is a fundamental problem in biology. We address this question in the floral meristem of Arabidopsis, which generates new tissues and organs through complex changes in growt

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3deee6485659f6fed094f2ea8dada89b
https://hal.inrae.fr/hal-03299500/file/2020.09.25.313312v1.full.pdf

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Multimodal characterization of acid-pretreated poplar reveals spectral and structural parameters strongly correlate with saccharification

Autor: Aya Zoghlami, Yassin Refahi, Christine Terryn, Gabriel Paës

Publikováno v: Bioresource Technology
Bioresource Technology, Elsevier, 2019, 293, ⟨10.1016/j.biortech.2019.122015⟩

International audience; Lignocellulose biomass can be transformed into sustainable chemicals, materials and energy but its natural recalcitrance requires the use of pretreatment to enhance subsequent catalytic steps. Dilute acid pretreatment is one o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6744f89ff20e4e6bb49bbfaca41e4f4c
https://hal.inrae.fr/hal-02623521

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Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal

Autor: Pau Formosa-Jordan, Adrienne H. K. Roeder, José Teles, Heather M Meyer, Yassin Refahi, Gwyneth C. Ingram, Henrik Jönsson, Rita San-Bento, James C. W. Locke

Publikováno v: eLife
eLife, eLife Sciences Publication, 2017, 6, ⟨10.7554/611619131⟩
eLife, 2017, 6, ⟨10.7554/611619131⟩
eLife (6), . (2017)
eLife, Vol 6 (2017)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::81f35eb3aae6b6de6fa9f18b3facda71
https://hal.archives-ouvertes.fr/hal-01607107

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Cell size and growth regulation in the Arabidopsis thaliana apical stem cell niche

Autor: Henrik Jönsson, Kerwyn Casey Huang, Lisa Willis, Raymond Wightman, Elliot M. Meyerowitz, Benoit Landrein, Yassin Refahi, José Teles

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America. 113(51)

Cell size and growth kinetics are fundamental cellular properties with important physiological implications. Classical studies on yeast, and recently on bacteria, have identified rules for cell size regulation in single cells, but in the more complex

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4b5203242ccc4eb5a0288e711ffedbc1
https://pubmed.ncbi.nlm.nih.gov/27930326

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