Zobrazeno 1 - 10
of 35
pro vyhledávání: '"Yana Rose"'
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
Recent advances in Artificial Intelligence and Machine Learning (e.g., AlphaFold, RosettaFold, and ESMFold) enable prediction of three-dimensional (3D) protein structures from amino acid sequences alone at accuracies comparable to lower-resolution ex
Externí odkaz:
https://doaj.org/article/996e6411879c41209af17a862968a3cb
Autor:
Stephen K. Burley, Helen M. Berman, Jose M. Duarte, Zukang Feng, Justin W. Flatt, Brian P. Hudson, Robert Lowe, Ezra Peisach, Dennis W. Piehl, Yana Rose, Andrej Sali, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, John D. Westbrook, Jasmine Y. Young, Christine Zardecki
Publikováno v:
Biomolecules, Vol 12, Iss 10, p 1425 (2022)
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the United States National Science Foundation, National Institutes of Health, and Department of Energy, supports structural biologists and Protein Data B
Externí odkaz:
https://doaj.org/article/670753c24cbc4a07a6bf385727b5f6ef
Autor:
Stephen K Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen, Paul A Craig, Gregg V Crichlow, Kenneth Dalenberg, Jose M Duarte, Shuchismita Dutta, Maryam Fayazi, Zukang Feng, Justin W Flatt, Sai Ganesan, Sutapa Ghosh, David S Goodsell, Rachel Kramer Green, Vladimir Guranovic, Jeremy Henry, Brian P Hudson, Igor Khokhriakov, Catherine L Lawson, Yuhe Liang, Robert Lowe, Ezra Peisach, Irina Persikova, Dennis W Piehl, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, Ben Webb, John D Westbrook, Shamara Whetstone, Jasmine Y Young, Arthur Zalevsky, Christine Zardecki
Publikováno v:
Nucleic Acids Research. 51:D488-D508
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center for the open-access PDB archive. As wwPDB-designated Archive Keeper, RCSB PDB is
Autor:
Stephen K. Burley, Zukang Feng, John D. Westbrook, Andrej Sali, Justin W Flatt, Rachel Kramer Green, Chenghua Shao, Sai J. Ganesan, Sutapa Ghosh, Brinda Vallat, David S. Goodsell, Jeremy Henry, Christine Zardecki, Joan Segura, Ezra Peisach, Charmi Bhikadiya, Catherine L. Lawson, Jose M. Duarte, Brian P. Hudson, Irina Persikova, Chunxiao Bi, Gregg V. Crichlow, Robert Lowe, Monica Sekharan, Jasmine Young, Shamara Whetstone, Li Chen, Vladimir Guranovic, Yu-He Liang, Dennis W Piehl, Maryam Fayazi, Maria Voigt, Sebastian Bittrich, Shuchismita Dutta, Yana Rose
Publikováno v:
Protein Sci
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the US National Science Foundation, National Institutes of Health, and Department of Energy, has served structural biologists and Protein Data Bank (PDB)
Autor:
Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen, Paul A. Craig, Gregg V. Crichlow, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta, Maryam Fayazi, Zukang Feng, Justin W. Flatt, Sai J. Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Jeremy Henry, Brian P. Hudson, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Ezra Peisach, Irina Persikova, Dennis W. Piehl, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, Benjamin Webb, John D. Westbrook, Shamara Whetstone, Jasmine Y. Young, Arthur Zalevsky, Christine Zardecki
Publikováno v:
Protein science : a publication of the Protein Society, vol 31, iss 12
Now in its 52nd year of continuous operations, the Protein Data Bank (PDB) is the premiere open-access global archive housing three-dimensional (3D) biomolecular structure data. It is jointly managed by the Worldwide Protein Data Bank (wwPDB) partner
Autor:
Sebastian Bittrich, Yana Rose, Joan Segura, Robert Lowe, John D Westbrook, Jose M Duarte, Stephen K Burley
Publikováno v:
Bioinformatics. 38:1452-1454
Motivation Membrane proteins are encoded by approximately one fifth of human genes but account for more than half of all US FDA approved drug targets. Thanks to new technological advances, the number of membrane proteins archived in the PDB is growin
Autor:
Sebastian Bittrich, Charmi Bhikadiya, Chunxiao Bi, Henry Chao, Jose M. Duarte, Shuchismita Dutta, Maryam Fayazi, Jeremy Henry, Igor Khokhriakov, Robert Lowe, Dennis W. Piehl, Joan Segura, Brinda Vallat, Maria Voigt, John D. Westbrook, Stephen K. Burley, Yana Rose
Publikováno v:
Journal of Molecular Biology. :167994
Autor:
Joan Segura, Jose Duarte, Sebastian Bittrich, Chunxiao Bi, Charmi Bhikadiya, Maryam Fayazi, Jeremy Henry, Igor Khokhriakov, Robert Lowe, Dennis W. Piehl, Brinda Vallat, Maria Voigt, John Westbrook, Yana Rose, Stephen K. Burley
Publikováno v:
Biophysical Journal. 122:282a
Publikováno v:
Bioinformatics. 38:3304-3305
Motivation Mapping positional features from one-dimensional (1D) sequences onto three-dimensional (3D) structures of biological macromolecules is a powerful tool to show geometric patterns of biochemical annotations and provide a better understanding
Autor:
Monica Sekharan, Jose M. Duarte, Brian P. Hudson, Zukang Feng, Ezra Peisach, Christine Zardecki, Andrej Sali, Maria Voigt, Sebastian Bittrich, Cole Christie, John D. Westbrook, Sutapa Ghosh, Chunxiao Bi, Li Chen, Dmytro Guzenko, Gregg V. Crichlow, Vladimir Guranovic, Yu-He Liang, Luigi Di Costanzo, Rachel Kramer Green, Kenneth Dalenberg, Yana Rose, Marina Zhuravleva, Jasmine Young, Alexander S. Rose, Harry Namkoong, Chenghua Shao, Sai J. Ganesan, David S. Goodsell, Charmi Bhikadiya, Shuchismita Dutta, Stephen K. Burley, Joan Segura, Catherine L. Lawson, Christopher Randle, Irina Persikova, Robert Lowe, Yi-Ping Tao
Publikováno v:
Nucleic Acids Research
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), the US data center for the global PDB archive and a founding member of the Worldwide Protein Data Bank partnership, serves tens of thousands of data depositors in