Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Yamada TG"'
Autor:
Sato G; Department of Biosciences & Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan., Kinoshita S; Department of Biosciences & Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan., Yamada TG; Department of Biosciences & Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan.; Department of Molecular Biology, University of California San Diego, La Jolla, California 92093, United States., Arai S; Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan., Kitaguchi T; Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta-cho, Yokohama, Kanagawa 226-8503, Japan., Funahashi A; Department of Biosciences & Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan., Doi N; Department of Biosciences & Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan., Fujiwara K; Department of Biosciences & Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan.
Publikováno v:
ACS synthetic biology [ACS Synth Biol] 2024 May 17; Vol. 13 (5), pp. 1572-1581. Date of Electronic Publication: 2024 May 08.
Autor:
Niarakis A; Université Paris-Saclay, Laboratoire Européen de Recherche pour la Polyarthrite rhumatoïde - Genhotel, Univ Evry, Evry, France.; Lifeware Group, Inria, Saclay-île de France, Palaiseau, France., Ostaszewski M; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Mazein A; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Kuperstein I; Institut Curie, P.S.L. Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, Paris, France., Kutmon M; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, Netherlands., Gillespie ME; Ontario Institute for Cancer Research, Toronto, ON, Canada.; St. John's University, Queens, NY, United States., Funahashi A; Department of Biosciences and Informatics, Keio University, Kanagawa, Japan., Acencio ML; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Hemedan A; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Aichem M; Department of Computer and Information Science, University of Konstanz, Konstanz, Germany., Klein K; Department of Computer and Information Science, University of Konstanz, Konstanz, Germany., Czauderna T; Faculty of Applied Computer Sciences & Biosciences, University of Applied Sciences Mittweida, Mittweida, Germany., Burtscher F; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Yamada TG; Department of Biosciences and Informatics, Keio University, Kanagawa, Japan., Hiki Y; Center for Biosciences and Informatics, Graduate School of Fundamental Science and Technology, Keio University, Kanagawa, Japan., Hiroi NF; Faculty of Creative Engineering, Kanagawa Institute of Technology, Kanagawa, Japan.; Keio University School of Medicine, Tokyo, Japan., Hu F; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, Netherlands.; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, Netherlands., Pham N; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, Netherlands.; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, Netherlands., Ehrhart F; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, Netherlands., Willighagen EL; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, Netherlands., Valdeolivas A; Institute for Computational Biomedicine, Heidelberg University, Faculty of Medicine, Heidelberg University Hospital, Bioquant, Heidelberg, Germany., Dugourd A; Institute for Computational Biomedicine, Heidelberg University, Faculty of Medicine, Heidelberg University Hospital, Bioquant, Heidelberg, Germany., Messina F; Department of Epidemiology, Preclinical Research and Advanced Diagnostic, National Institute for Infectious Diseases' Lazzaro Spallanzani' - IRCCS, Rome, Italy., Esteban-Medina M; Computational Medicine Platform, Andalusian Public Foundation Progress and Health-FPS, Sevilla, Spain.; Computational Systems Medicine, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocío, Sevilla, Spain., Peña-Chilet M; Computational Medicine Platform, Andalusian Public Foundation Progress and Health-FPS, Sevilla, Spain.; Computational Systems Medicine, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocío, Sevilla, Spain.; Bioinformatics in Rare Diseases (BiER), Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), FPS, Hospital Virgen del Rocio, Seville, Spain., Rian K; Computational Medicine Platform, Andalusian Public Foundation Progress and Health-FPS, Sevilla, Spain., Soliman S; Lifeware Group, Inria, Saclay-île de France, Palaiseau, France., Aghamiri SS; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, United States., Puniya BL; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, United States., Naldi A; Lifeware Group, Inria, Saclay-île de France, Palaiseau, France., Helikar T; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, United States., Singh V; Université Paris-Saclay, Laboratoire Européen de Recherche pour la Polyarthrite rhumatoïde - Genhotel, Univ Evry, Evry, France., Fernández MF; Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway., Bermudez V; Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway., Tsirvouli E; Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway., Montagud A; Barcelona Supercomputing Center (BSC.), Barcelona, Spain., Noël V; Institut Curie, P.S.L. Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, Paris, France., Ponce-de-Leon M; Barcelona Supercomputing Center (BSC.), Barcelona, Spain., Maier D; Labvantage-Biomax GmbH, Planegg, Germany., Bauch A; Labvantage-Biomax GmbH, Planegg, Germany., Gyori BM; Harvard Medical School, Laboratory of Systems Pharmacology, Boston, MA, United States., Bachman JA; Harvard Medical School, Laboratory of Systems Pharmacology, Boston, MA, United States., Luna A; Computational Biology Branch, National Library of Medicine, Bethesda, MD, United States.; Department of Systems Biology, Harvard Medical School, Boston, MA, United States., Piñero J; Medbioinformatics Solutions SL, Barcelona, Spain.; Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Dept. of Medicine and Life Sciences, Universitat Pompeu Fabra (UPF), Barcelona, Spain., Furlong LI; Medbioinformatics Solutions SL, Barcelona, Spain.; Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Dept. of Medicine and Life Sciences, Universitat Pompeu Fabra (UPF), Barcelona, Spain., Balaur I; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Rougny A; Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST), Aomi, Tokyo, Japan.; Com. Bio Big Data Open Innovation Lab. (CBBD-OIL), AIST, Aomi, Tokyo, Japan., Jarosz Y; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Overall RW; Institute for Biology, Humboldt University of Berlin, Berlin, Germany., Phair R; Integrative Bioinformatics, Inc., Mountain View, CA, United States., Perfetto L; Department of Biology and Biotechnology Charles Darwin, Sapienza University of Rome, Rome, Italy., Matthews L; Department of Biochemistry & Molecular Pharmacology, NYU. Langone Medical Center, New York, NY, United States., Rex DAB; Centre for Integrative Omics Data Science, Yenepoya (Deemed to be University), Derlakatte, Mangalore, India., Orlic-Milacic M; Ontario Institute for Cancer Research, Toronto, ON, Canada., Gomez LCM; Institut Curie, P.S.L. Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, Paris, France., De Meulder B; Association E.I.S.B.M, Brignais, France., Ravel JM; Institut Curie, P.S.L. Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, Paris, France., Jassal B; Ontario Institute for Cancer Research, Toronto, ON, Canada., Satagopam V; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.; Frankfurt Institute for Advanced Studies, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main, Germany., Wu G; Oregon Health Sciences University, Portland, OR, United States., Golebiewski M; Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany., Gawron P; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Calzone L; Institut Curie, P.S.L. Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, Paris, France., Beckmann JS; University of Lausanne, Lausanne, Switzerland., Evelo CT; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, Netherlands., D'Eustachio P; Department of Biochemistry & Molecular Pharmacology, NYU. Langone Medical Center, New York, NY, United States., Schreiber F; Department of Computer and Information Science, University of Konstanz, Konstanz, Germany.; Faculty of Information Technology, Monash University, Clayton, Victoria, VIC, Australia., Saez-Rodriguez J; Institute for Computational Biomedicine, Heidelberg University, Faculty of Medicine, Heidelberg University Hospital, Bioquant, Heidelberg, Germany., Dopazo J; Computational Medicine Platform, Andalusian Public Foundation Progress and Health-FPS, Sevilla, Spain.; Computational Systems Medicine, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocío, Sevilla, Spain.; Bioinformatics in Rare Diseases (BiER), Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), FPS, Hospital Virgen del Rocio, Seville, Spain.; FPS/ELIXIR-es, Hospital Virgen del Rocío, Sevilla, Spain., Kuiper M; Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway., Valencia A; Barcelona Supercomputing Center (BSC.), Barcelona, Spain.; I.C.R.E.A., Pg. Lluís Companys 23, Barcelona, Spain., Wolkenhauer O; Department of Systems Biology & Bioinformatics, University of Rostock, Rostock, Germany.; Leibniz Institute for Food Systems Biology, at the Technical University Munich, Munich, Germany., Kitano H; Systems Biology Institute, Tokyo, Japan., Barillot E; Institut Curie, P.S.L. Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, Paris, France., Auffray C; Association E.I.S.B.M, Brignais, France., Balling R; Institute of Molecular Psychiatry, University of Bonn, Bonn, Germany., Schneider R; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Publikováno v:
Frontiers in immunology [Front Immunol] 2024 Feb 13; Vol. 14, pp. 1282859. Date of Electronic Publication: 2024 Feb 13 (Print Publication: 2023).
Autor:
Tada S; Center for Biosciences and Informatics, Graduate School of Fundamental Science and Technology, Keio University, Yokohama, Kanagawa, 223-8522, Japan., Yamazaki Y; Center for Biosciences and Informatics, Graduate School of Fundamental Science and Technology, Keio University, Yokohama, Kanagawa, 223-8522, Japan., Yamamoto K; Cell Architecture Laboratory, Department of Chromosome Science, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.; Genetics Program, The Graduate University for Advanced Studies, SOKENDAI, Mishima, Shizuoka 411-8540, Japan.; Faculty of Applied Bioscience, Kanagawa Institute of Technology, Atsugi, Kanagawa, 243-0292, Japan.; Division of Developmental Physiology, Institute for Genetic Medicine, Hokkaido University, Sapporo, Hokkaido, 060-0815, Japan., Fujii K; Cell Architecture Laboratory, Department of Chromosome Science, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.; Genetics Program, The Graduate University for Advanced Studies, SOKENDAI, Mishima, Shizuoka 411-8540, Japan., Yamada TG; Center for Biosciences and Informatics, Graduate School of Fundamental Science and Technology, Keio University, Yokohama, Kanagawa, 223-8522, Japan.; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan., Hiroi NF; School of Medicine, Keio University, Shinjuku-ward, Tokyo, 160-8582, Japan.; Faculty of Creative Engineering, Kanagawa Institute of Technology, Atsugi, Kanagawa, 243-0292, Japan., Kimura A; Cell Architecture Laboratory, Department of Chromosome Science, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.; Genetics Program, The Graduate University for Advanced Studies, SOKENDAI, Mishima, Shizuoka 411-8540, Japan.; Center for Data Assimilation Research and Applications, Joint Support-Center for Data Science Research, Research Organization of Information and Systems (ROIS), Tachikawa, 190-8562, Japan., Funahashi A; Center for Biosciences and Informatics, Graduate School of Fundamental Science and Technology, Keio University, Yokohama, Kanagawa, 223-8522, Japan.; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan.
Publikováno v:
Heliyon [Heliyon] 2024 Feb 05; Vol. 10 (3), pp. e25494. Date of Electronic Publication: 2024 Feb 05 (Print Publication: 2024).
Autor:
Imashiro C; Graduate School of Engineering, The University of Tokyo, Tokyo 113-0033, Japan.; Department of Mechanical Engineering, Keio University, Yokohama, Kanagawa 223-0061, Japan., Jin Y; School of Integrated Design Engineering, Graduate School of Science and Technology, Keio University, Yokohama, Kanagawa 223-0061, Japan., Hayama M; School of Integrated Design Engineering, Graduate School of Science and Technology, Keio University, Yokohama, Kanagawa 223-0061, Japan., Yamada TG; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa 223-0061, Japan., Funahashi A; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa 223-0061, Japan., Sakaguchi K; Department of Integrative Bioscience and Biomedical Engineering, Graduate School of Advanced Science and Engineering, Waseda University, TWIns, Tokyo 162-8480, Japan., Umezu S; Department of Integrative Bioscience and Biomedical Engineering, Graduate School of Advanced Science and Engineering, Waseda University, TWIns, Tokyo 162-8480, Japan.; Department of Modern Mechanical Engineering, Waseda University, Tokyo 169-8555, Japan., Komotori J; Department of Mechanical Engineering, Keio University, Yokohama, Kanagawa 223-0061, Japan.
Publikováno v:
Cyborg and bionic systems (Washington, D.C.) [Cyborg Bionic Syst] 2023 Aug 07; Vol. 4, pp. 0049. Date of Electronic Publication: 2023 Aug 07 (Print Publication: 2023).
Autor:
Tokuoka Y; Center for Biosciences and Informatics, Graduate School of Fundamental Science and Technology, Keio University, 3-14-1 Hiyoshi, Kouhoku-ku, Yokohama, 223-8522, Japan., Yamada TG; Center for Biosciences and Informatics, Graduate School of Fundamental Science and Technology, Keio University, 3-14-1 Hiyoshi, Kouhoku-ku, Yokohama, 223-8522, Japan; Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Kouhoku-ku, Yokohama, 223-8522, Japan., Mashiko D; Faculty of Biology-Oriented Science and Technology, Kindai University, 930 Nishimitani, Kinokawa, Wakayama, 649-6493, Japan., Ikeda Z; Faculty of Biology-Oriented Science and Technology, Kindai University, 930 Nishimitani, Kinokawa, Wakayama, 649-6493, Japan., Kobayashi TJ; Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo, 153-8505, Japan., Yamagata K; Faculty of Biology-Oriented Science and Technology, Kindai University, 930 Nishimitani, Kinokawa, Wakayama, 649-6493, Japan., Funahashi A; Center for Biosciences and Informatics, Graduate School of Fundamental Science and Technology, Keio University, 3-14-1 Hiyoshi, Kouhoku-ku, Yokohama, 223-8522, Japan; Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Kouhoku-ku, Yokohama, 223-8522, Japan. Electronic address: funa@bio.keio.ac.jp.
Publikováno v:
Artificial intelligence in medicine [Artif Intell Med] 2022 Dec; Vol. 134, pp. 102432. Date of Electronic Publication: 2022 Nov 02.
Autor:
Nakatani RJ; Graduate School of Fundamental Science and Technology, Center for Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan., Itabashi M; Graduate School of Fundamental Science and Technology, Center for Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan., Yamada TG; Graduate School of Fundamental Science and Technology, Center for Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan.; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan., Hiroi NF; School of Medicine, Keio University, Shinjuku-ku, Tokyo, 160-8582, Japan. hiroi@bio.keio.ac.jp.; Faculty of Creative Engineering, Kanagawa Institute of Technology, Atsugi, Kanagawa, 243-0292, Japan. hiroi@bio.keio.ac.jp., Funahashi A; Graduate School of Fundamental Science and Technology, Center for Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan. funa@bio.keio.ac.jp.; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan. funa@bio.keio.ac.jp.
Publikováno v:
Scientific reports [Sci Rep] 2022 Oct 26; Vol. 12 (1), pp. 17946. Date of Electronic Publication: 2022 Oct 26.
Autor:
Yoshida Y; Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0035, Japan., Shaikhutdinov N; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Kozlova O; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Itoh M; Preventive Medicine & Diagnosis Innovation Program (PMI), RIKEN, Wako, Saitama 351-0198, Japan., Tagami M; Center for Integrative Medical Sciences, RIKEN, Yokohama, Kanagawa 230-0045, Japan., Murata M; Center for Integrative Medical Sciences, RIKEN, Yokohama, Kanagawa 230-0045, Japan., Nishiyori-Sueki H; Center for Integrative Medical Sciences, RIKEN, Yokohama, Kanagawa 230-0045, Japan., Kojima-Ishiyama M; Center for Integrative Medical Sciences, RIKEN, Yokohama, Kanagawa 230-0045, Japan., Noma S; Center for Integrative Medical Sciences, RIKEN, Yokohama, Kanagawa 230-0045, Japan., Cherkasov A; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Gazizova G; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Nasibullina A; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Deviatiiarov R; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Shagimardanova E; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Ryabova A; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Yamaguchi K; Functional Genomics Facility, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan., Bino T; Functional Genomics Facility, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan., Shigenobu S; Functional Genomics Facility, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan., Tokumoto S; Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8562, Japan., Miyata Y; Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki 305-8634, Japan., Cornette R; Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki 305-8634, Japan., Yamada TG; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa 223-8522, Japan., Funahashi A; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa 223-8522, Japan., Tomita M; Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0035, Japan., Gusev O; Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420012, Russian Federation., Kikawada T; Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8562, Japan.
Publikováno v:
NAR genomics and bioinformatics [NAR Genom Bioinform] 2022 Apr 05; Vol. 4 (2), pp. lqac029. Date of Electronic Publication: 2022 Apr 05 (Print Publication: 2022).
Autor:
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, Monraz Gómez LC, Somers J, Hoch M, Kumar Gupta S, Scheel J, Borlinghaus H, Czauderna T, Schreiber F, Montagud A, Ponce de Leon M, Funahashi A, Hiki Y, Hiroi N, Yamada TG, Dräger A, Renz A, Naveez M, Bocskei Z, Messina F, Börnigen D, Fergusson L, Conti M, Rameil M, Nakonecnij V, Vanhoefer J, Schmiester L, Wang M, Ackerman EE, Shoemaker JE, Zucker J, Oxford K, Teuton J, Kocakaya E, Summak GY, Hanspers K, Kutmon M, Coort S, Eijssen L, Ehrhart F, Rex DAB, Slenter D, Martens M, Pham N, Haw R, Jassal B, Matthews L, Orlic-Milacic M, Senff-Ribeiro A, Rothfels K, Shamovsky V, Stephan R, Sevilla C, Varusai T, Ravel JM, Fraser R, Ortseifen V, Marchesi S, Gawron P, Smula E, Heirendt L, Satagopam V, Wu G, Riutta A, Golebiewski M, Owen S, Goble C, Hu X, Overall RW, Maier D, Bauch A, Gyori BM, Bachman JA, Vega C, Grouès V, Vazquez M, Porras P, Licata L, Iannuccelli M, Sacco F, Nesterova A, Yuryev A, de Waard A, Turei D, Luna A, Babur O, Soliman S, Valdeolivas A, Esteban-Medina M, Peña-Chilet M, Rian K, Helikar T, Puniya BL, Modos D, Treveil A, Olbei M, De Meulder B, Ballereau S, Dugourd A, Naldi A, Noël V, Calzone L, Sander C, Demir E, Korcsmaros T, Freeman TC, Augé F, Beckmann JS, Hasenauer J, Wolkenhauer O, Willighagen EL, Pico AR, Evelo CT, Gillespie ME, Stein LD, Hermjakob H, D'Eustachio P, Saez-Rodriguez J, Dopazo J, Valencia A, Kitano H, Barillot E, Auffray C, Balling R, Schneider R
Publikováno v:
Molecular systems biology [Mol Syst Biol] 2021 Dec; Vol. 17 (12), pp. e10851.
Autor:
Miyata Y; Division of Biomaterial Sciences, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan., Fuse H; Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan., Tokumoto S; Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan., Hiki Y; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, Japan., Deviatiiarov R; Extreme Biology Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia., Yoshida Y; Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan.; Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, Japan., Yamada TG; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, Japan., Cornette R; Division of Biomaterial Sciences, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan., Gusev O; Extreme Biology Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.; Laboratory for Transcriptome Technology, RIKEN Center for Integrative Medical Sciences, RIKEN, Yokohama, Kanagawa, Japan., Shagimardanova E; Extreme Biology Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia., Funahashi A; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, Japan., Kikawada T; Division of Biomaterial Sciences, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan. kikawada@affrc.go.jp.; Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan. kikawada@affrc.go.jp.
Publikováno v:
Scientific reports [Sci Rep] 2021 Oct 05; Vol. 11 (1), pp. 19698. Date of Electronic Publication: 2021 Oct 05.
Autor:
Ostaszewski M; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Niarakis A; Université Paris-Saclay, Laboratoire Européen de Recherche pour la Polyarthrite rhumatoïde - Genhotel, Univ Evry, Evry, France.; Lifeware Group, Inria Saclay-Ile de France, Palaiseau, France., Mazein A; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Kuperstein I; Institut Curie, PSL Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, Paris, France., Phair R; Integrative Bioinformatics, Inc., Mountain View, CA, USA., Orta-Resendiz A; Institut Pasteur, Université de Paris, Unité HIV, Inflammation et Persistance, Paris, France.; Bio Sorbonne Paris Cité, Université de Paris, Paris, France., Singh V; Université Paris-Saclay, Laboratoire Européen de Recherche pour la Polyarthrite rhumatoïde - Genhotel, Univ Evry, Evry, France., Aghamiri SS; Inserm- Institut national de la santé et de la recherche médicale, Paris, France., Acencio ML; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Glaab E; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Ruepp A; Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Neuherberg, Germany., Fobo G; Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Neuherberg, Germany., Montrone C; Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Neuherberg, Germany., Brauner B; Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Neuherberg, Germany., Frishman G; Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Neuherberg, Germany., Monraz Gómez LC; Institut Curie, PSL Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, Paris, France., Somers J; Department of Molecular and Medical Genetics, Oregon Health & Sciences University, Portland, OR, USA., Hoch M; Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany., Kumar Gupta S; Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany., Scheel J; Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany., Borlinghaus H; Department of Computer and Information Science, University of Konstanz, Konstanz, Germany., Czauderna T; Faculty of Information Technology, Department of Human-Centred Computing, Monash University, Clayton, Vic., Australia., Schreiber F; Department of Computer and Information Science, University of Konstanz, Konstanz, Germany.; Faculty of Information Technology, Department of Human-Centred Computing, Monash University, Clayton, Vic., Australia., Montagud A; Barcelona Supercomputing Center (BSC), Barcelona, Spain., Ponce de Leon M; Barcelona Supercomputing Center (BSC), Barcelona, Spain., Funahashi A; Department of Biosciences and Informatics, Keio University, Yokohama, Japan., Hiki Y; Department of Biosciences and Informatics, Keio University, Yokohama, Japan., Hiroi N; Graduate School of Media and Governance, Research Institute at SFC, Keio University, Kanagawa, Japan., Yamada TG; Department of Biosciences and Informatics, Keio University, Yokohama, Japan., Dräger A; Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), University of Tübingen, Tübingen, Germany.; Department of Computer Science, University of Tübingen, Tübingen, Germany.; German Center for Infection Research (DZIF), partner site, Tübingen, Germany., Renz A; Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), University of Tübingen, Tübingen, Germany.; Department of Computer Science, University of Tübingen, Tübingen, Germany., Naveez M; Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany.; Institute of Applied Computer Systems, Riga Technical University, Riga, Latvia., Bocskei Z; Sanofi R&D, Translational Sciences, Chilly-Mazarin, France., Messina F; Dipartimento di Epidemiologia Ricerca Pre-Clinica e Diagnostica Avanzata, National Institute for Infectious Diseases 'Lazzaro Spallanzani' I.R.C.C.S., Rome, Italy.; COVID-19 INMI Network Medicine for IDs Study Group, National Institute for Infectious Diseases 'Lazzaro Spallanzani' I.R.C.C.S, Rome, Italy., Börnigen D; Bioinformatics Core Facility, Universitätsklinikum Hamburg-Eppendorf, Hamburg, Germany., Fergusson L; Royal (Dick) School of Veterinary Medicine, The University of Edinburgh, Edinburgh, UK., Conti M; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Rameil M; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Nakonecnij V; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Vanhoefer J; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Schmiester L; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany.; Center for Mathematics, Chair of Mathematical Modeling of Biological Systems, Technische Universität München, Garching, Germany., Wang M; Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA, USA., Ackerman EE; Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA, USA., Shoemaker JE; Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA, USA.; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA., Zucker J; Pacific Northwest National Laboratory, Richland, WA, USA., Oxford K; Pacific Northwest National Laboratory, Richland, WA, USA., Teuton J; Pacific Northwest National Laboratory, Richland, WA, USA., Kocakaya E; Stem Cell Institute, Ankara University, Ankara, Turkey., Summak GY; Stem Cell Institute, Ankara University, Ankara, Turkey., Hanspers K; Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA, USA., Kutmon M; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands.; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, The Netherlands., Coort S; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands., Eijssen L; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands.; Maastricht University Medical Centre, Maastricht, The Netherlands., Ehrhart F; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands.; Maastricht University Medical Centre, Maastricht, The Netherlands., Rex DAB; Center for Systems Biology and Molecular Medicine, Yenepoya (Deemed to be University), Mangalore, India., Slenter D; 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European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire, UK., Varusai T; European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire, UK., Ravel JM; INSERM UMR_S 1256, Nutrition, Genetics, and Environmental Risk Exposure (NGERE), Faculty of Medicine of Nancy, University of Lorraine, Nancy, France.; Laboratoire de génétique médicale, CHRU Nancy, Nancy, France., Fraser R; Queen's Medical Research Institute, The University of Edinburgh, Edinburgh, UK., Ortseifen V; Senior Research Group in Genome Research of Industrial Microorganisms, Center for Biotechnology, Bielefeld University, Bielefeld, Germany., Marchesi S; Department of Surgical Science, Uppsala University, Uppsala, Sweden., Gawron P; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.; Institute of Computing Science, Poznan University of Technology, Poznan, Poland., Smula E; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Heirendt L; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Satagopam V; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Wu G; Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA., Riutta A; Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA, USA., Golebiewski M; Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany., Owen S; Department of Computer Science, The University of Manchester, Manchester, UK., Goble C; Department of Computer Science, The University of Manchester, Manchester, UK., Hu X; Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany., Overall RW; German Center for Neurodegenerative Diseases (DZNE) Dresden, Dresden, Germany.; Center for Regenerative Therapies Dresden (CRTD), Technische Universität Dresden, Dresden, Germany.; Institute for Biology, Humboldt University of Berlin, Berlin, Germany., Maier D; Biomax Informatics AG, Planegg, Germany., Bauch A; Biomax Informatics AG, Planegg, Germany., Gyori BM; Harvard Medical School, Laboratory of Systems Pharmacology, Boston, MA, USA., Bachman JA; Harvard Medical School, Laboratory of Systems Pharmacology, Boston, MA, USA., Vega C; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Grouès V; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Vazquez M; Barcelona Supercomputing Center (BSC), Barcelona, Spain., Porras P; European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire, UK., Licata L; Department of Biology, University of Rome Tor Vergata, Rome, Italy., Iannuccelli M; Department of Biology, University of Rome Tor Vergata, Rome, Italy., Sacco F; Department of Biology, University of Rome Tor Vergata, Rome, Italy., Nesterova A; Elsevier, Philadelphia, PA, USA., Yuryev A; Elsevier, Philadelphia, PA, USA., de Waard A; Research Collaborations Unit, Elsevier, Jericho, VT, USA., Turei D; Institute for Computational Biomedicine, Heidelberg University, Heidelberg, Germany., Luna A; cBio Center, Divisions of Biostatistics and Computational Biology, Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Cell Biology, Harvard Medical School, Boston, MA, USA., Babur O; Computer Science Department, University of Massachusetts Boston, Boston, MA, USA., Soliman S; Lifeware Group, Inria Saclay-Ile de France, Palaiseau, France., Valdeolivas A; Institute for Computational Biomedicine, Heidelberg University, Heidelberg, Germany., Esteban-Medina M; Clinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocio, Sevilla, Spain.; Computational Systems Medicine Group, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocio, Sevilla, Spain., Peña-Chilet M; Clinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocio, Sevilla, Spain.; 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Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK., Dugourd A; Institute for Computational Biomedicine, Heidelberg University, Heidelberg, Germany.; Institute of Experimental Medicine and Systems Biology, Faculty of Medicine, RWTH, Aachen University, Aachen, Germany., Naldi A; Lifeware Group, Inria Saclay-Ile de France, Palaiseau, France., Noël V; Institut Curie, PSL Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, Paris, France., Calzone L; Institut Curie, PSL Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, Paris, France., Sander C; cBio Center, Divisions of Biostatistics and Computational Biology, Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Cell Biology, Harvard Medical School, Boston, MA, USA., Demir E; Department of Molecular and Medical Genetics, Oregon Health & Sciences University, Portland, OR, USA., Korcsmaros T; Quadram Institute Bioscience, Norwich, UK.; Earlham Institute, Norwich, UK., Freeman TC; The Roslin Institute, University of Edinburgh, Edinburgh, UK., Augé F; Sanofi R&D, Translational Sciences, Chilly-Mazarin, France., Beckmann JS; University of Lausanne, Lausanne, Switzerland., Hasenauer J; Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, Germany.; Interdisciplinary Research Unit Mathematics and Life Sciences, University of Bonn, Bonn, Germany., Wolkenhauer O; Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany., Wilighagen EL; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands., Pico AR; Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA, USA., Evelo CT; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands.; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, The Netherlands., Gillespie ME; MaRS Centre, Ontario Institute for Cancer Research, Toronto, ON, Canada.; St. John's University College of Pharmacy and Health Sciences, Queens, NY, USA., Stein LD; MaRS Centre, Ontario Institute for Cancer Research, Toronto, ON, Canada.; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada., Hermjakob H; European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire, UK., D'Eustachio P; NYU Grossman School of Medicine, New York, NY, USA., Saez-Rodriguez J; Institute for Computational Biomedicine, Heidelberg University, Heidelberg, Germany., Dopazo J; Clinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocio, Sevilla, Spain.; Computational Systems Medicine Group, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocio, Sevilla, Spain.; Bioinformatics in Rare Diseases (BiER), Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), FPS, Hospital Virgen del Rocío, Sevilla, Spain.; FPS/ELIXIR-es, Hospital Virgen del Rocío, Sevilla, Spain., Valencia A; Barcelona Supercomputing Center (BSC), Barcelona, Spain.; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain., Kitano H; Systems Biology Institute, Tokyo, Japan.; Okinawa Institute of Science and Technology Graduate School, Okinawa, Japan., Barillot E; Institut Curie, PSL Research University, Paris, France.; INSERM, Paris, France.; MINES ParisTech, PSL Research University, Paris, France., Auffray C; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK., Balling R; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg., Schneider R; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Publikováno v:
Molecular systems biology [Mol Syst Biol] 2021 Oct; Vol. 17 (10), pp. e10387.